Institute for Biodiversity and Ecosystem Dynamics

Publications (2017-2012)

2017

2016

  • Spilling, K, Schulz, KG, Paul, AJ, Boxhammer, T, Achterberg, EP, Hornick, T, Lischka, S, Stuhr, A, Bermúdez, R, Czerny, J, Crawfurd, K, Brussaard, CPD, Grossart, H-P & Riebesell, U (2016). 'Effects of ocean acidification on pelagic carbon fluxes in a mesocosm experiment' Biogeosciences, vol 13, no. 21, 6081-6093. DOI: 10.5194/bg-13-6081-2016
  • Bade, R, Bijlsma, L, Baz-Lomba, JA, Sancho, JV, Castiglioni, S, Castrignanò, E, Causanilles, A, Gracia-Lor, E, Kasprzyk- Hordern, B, Kinyua, J, McCall, A-K, van Nuijs, ALN, Ort, C, Plósz, BG, Ramin, P, Rousis, NI, Ryu, Y, Thomas, KV, de Voogt, P, Zuccato, E & Hernández, F (2016). 'Liquid chromatography-tandem mass spectrometry determination of synthetic cathinones and phenethylamines in influent wastewater of eight European cities' Chemosphere, vol 168, 1032-1041. DOI:   10.1016/j.chemosphere.2016.10.107
  • Deemer, BR, Harrison, JA, Li, S, Beaulieu, JJ, Delsontro, T, Barros, N, Bezerra-Neto, JF, Powers, SM, dos Santos, MA & Vonk, A (2016). 'Greenhouse Gas Emissions from Reservoir Water Surfaces: A New Global Synthesis' BioScience, vol 66, no. 11, 949-964. DOI: 10.1093/biosci/biw117
  • Vonk, JA, van Kuijk, BF, van Beusekom, M, Hunting, ER & Kraak, MHS (2016). 'The significance of linoleic acid in food sources for detritivorous benthic invertebrates' Scientific Reports, vol 6, 35785. DOI: 10.1038/srep35785
  • Hernández, F, Castiglioni, S, Covaci, A, de Voogt, P, Emke, E, Kasprzyk-Hordern, B, Ort, C, Reid, M, Sancho, JV, Thomas, KV, van Nuijs, ALN, Zuccato, E & Bijlsma, L (2016). 'Mass spectrometric strategies for the investigation of biomarkers of illicit drug use in wastewater' Mass Spectrometry Reviews. DOI: 10.1002/mas.21525
  • Rix, L, de Goeij, JM, van Oevelen, D, Struck, U, Al-Horani, FA, Wild, C & Naumann, MS (2016). 'Differential recycling of coral and algal dissolved organic matter via the sponge loop' Functional Ecology. DOI: 10.1111/1365-2435.12758
  • Ryu, Y, Barceló, D, Barron, LP, Bijlsma, L, Castiglioni, S, de Voogt, P, Emke, E, Hernández, F, Lai, FY, Lopes, A, López de Alda, M, Mastroianni, N, Munro, K, O'Brien, J, Ort, C, Plósz, BG, Reid, MJ, Yargeau, V & Thomas, KV (2016). ' Comparative measurement and quantitative risk assessment of alcohol consumption through wastewater-based epidemiology: An international study in 20 cities' Science of the Total Environment, vol 565, 977-983. DOI: 10.1016/j.scitotenv.2016.04.138
  • Ibelings, BW, Fastner, J, Bormans, M & Visser, PM (2016). 'Cyanobacterial blooms. Ecology, prevention, mitigation and control: Editorial to a CYANOCOST Special Issue' Aquatic Ecology, vol 50, no. 3, 327-331. DOI: 10.1007/s10452-016- 9595-y
  • Ibelings, BW, Bormans, M, Fastner, J & Visser, PM (2016). 'CYANOCOST special issue on cyanobacterial blooms: synopsis-a critical review of the management options for their prevention, control and mitigation' Aquatic Ecology, vol 50, no. 3, 595-605.
  • Matthijs, HCP, Jančula, D, Visser, PM & Maršálek, B (2016)., 'Existing and emerging cyanocidal compounds: New perspectives for cyanobacterial bloom mitigation' Aquatic Ecology, vol 50, no. 3, 443-460.
  • Mantzouki, E, Visser, PM, Bormans, M & Ibelings, BW (2016). 'Understanding the key ecological traits of cyanobacteria as a basis for their management and control in changing lakes' Aquatic Ecology, vol 50, no. 3, 333-350.
  • Quinn, RA, Vermeij, MJA, Hartmann, AC, d'Auriac, IG, Benler, S, Haas, A, Quistad, SD, Lim, YW, Little, M, Sandin, S, Smith, JE, Dorrestein, PC & Rohwer, F (2016). 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proceedings of the Royal Society B-Biological Sciences, vol 283, no. 1837. DOI: 10.1098/rspb.2016.1485
  • Reemtsma, T, Berger, U, Arp, HPH, Gallarda, H, Knepper, TP, Neumann, M, Quintana, JB & de Voogt, P (2016). 'Mind the Gap: Persistent and Mobile Organic Compounds—Water Contaminants That Slip Through' Environmental Science and Technology, vol 50, 10308-10315.
  • Kinyua, J, Negreira, N, Miserez, B, Causanilles, A, Emke, E, de Voogt, P, Ramsey, J, Covaci, A & van Nuijs, ALN (2016) ' Qualitative screening of pooled urine samples in Belgium and United Kingdom to map the use of new psychoactive substances' Science of the Total Environment, vol 573, 1527-1535.
  • Vughs, D, Baken, KA, Kolkman, A, Martijn, AJ & de Voogt, P (2016). 'Application of effect-directed analysis to identify mutagenic nitrogenous disinfection by-products of advanced drinking water treatment' Environmental Science and Pollution Research.
  • den Haan, J, Huisman, J, Brocke, HJ, Goehlich, H, Latijnhouwers, KRW, van Heeringen, S, Honcoop, SAS, Bleyenberg, TE, Schouten, S, Cerli, C, Hoitinga, L, Vermeij, MJA & Visser, PM (2016). 'Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse' Scientific Reports, vol 6, 28821.
  • Swierts, T & Vermeij, MJA (2016). 'Competitive interactions between corals and turf algae depend on coral colony form' PeerJ, vol 4, e1984.
  • Belila, A, El-Chakhtoura, J, Otaibi, N, Muijzer, G, Gonzalez-Gil, G, Saikaly, PE, van Loosdrecht, MCM & Vrouwenvelder, JS (2016). 'Bacterial community structure and variation in a full-scale seawater desalination plant for drinking water production' Water Research, vol 94, 62-72.
  • Quinn, RA, Vermeij, MJA, Hartmann, AC, d'Auriac, IG, Benler, S, Haas, A, Quistad, SD, Lim, YW, Little, M, Sandin, S, Smith, JE, Dorrestein, PC & Rohwer, F (2016). 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence' Proceedings of the Royal Society B-Biological Sciences, vol 283, no. 1829.
  • Bullerjahn, GS, McKay, RM, Davis, TW, Baker, DB, Boyer, GL, D'Anglada, LV, Doucette, GJ, Ho, JC, Irwin, EG, Kling, CL, Kudela, RM, Kurmayer, R, Michalak, AM, Ortiz, JD, Otten, TG, Paerl, HW, Qin, B, Sohngen, BL, Stumpf, RP, Visser, PM & Wilhelm, SW (2016). 'Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study' Harmful Algae, vol 54, 223-238.
  • Knowles, B, Silveira, CB, Bailey, BA, Barott, K, Cantu, VA, Cobian-Gueemes, AG, Coutinho, FH, Dinsdale, EA, Felts, B, Furby, KA, George, EE, Green, KT, Gregoracci, GB, Haas, AF, Haggerty, JM, Hester, ER, Hisakawa, N, Kelly, LW, Lim, YW, Little, M, Luque, A, McDole-Somera, T, McNair, K, de Oliveira, LS, Quistad, SD, Robinett, NL, Sala, E, Salamon, P, Sanchez, SE, Sandin, S, Silva, GGZ, Smith, J, Sullivan, C, Thompson, C, Vermeij, MJA, Youle, M, Young, C, Zgliczynski, B, Brainard, R, Edwards, RA, Nulton, J, Thompson, F & Rohwer, F (2016). 'Lytic to temperate switching of viral communities ' Nature, vol 531, no. 7595, 466.
  • Mueller, B, den Haan, J, Visser, PM, Vermeij, MJA & van Duyl, FC (2016). 'Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae' Scientific Reports, vol 6, 23248.
  • Salcedo-Sanz, S, Cuadra, L & Vermeij, MJA (2016). 'A review of Computational Intelligence techniques in coral reef-related applications' Ecological Informatics, vol 32, 107-123.
  • Del Signore, A, Lenders, HJR, Hendriks, AJ, Vonk, A, Mulder, C & Leuven, RSEW (2016). 'Size-Mediated Effects of Water- Flow Velocity on Riverine Fish Species' RIVER RESEARCH AND APPLICATIONS, vol 32, no. 3, 390-398.
  • Ganase, A, Bongaerts, P, Visser, PM & Dove, SG (2016). 'The effect of seasonal temperature extremes on sediment rejection in three scleractinian coral species' Coral reefs, vol 35, no. 1, 187-191.
  • Hunting, ER, Vonk, JA, Musters, CJM, Kraak, MHS & Vijver, MG (2016). 'Effects of agricultural practices on organic matter degradation in ditches' Scientific Reports, vol 6, 21474.
  • Bohan, DA, Landuyt, D, Ma, A, Macfadyen, S, Martinet, V, Massol, F, McInerny, G, Montoya, JM, Mulder, C, Pascual, U, Pocock, MJO, White, P, Blanchemanche, S, Bonkowski, M, Bretagnolle, V, Bronmark, C, Dicks, L, Dumbrell, A, Eisenhauer, N, Friberg, N, Gessner, MO, Gill, RJ, Gray, C, Haughton, A, Ibanez, S, Jensen, J, Jeppesen, E, Jokela, J, Lacroix, G, Lannou, C, Lavorel, S, Le Galliard, J-F, Lescourret, F, Liu, S, Loeuille, N, McLaughlin, O, Muggleton, S, Penuelas, J, Petanidou, T, Petit, S, Pomati, F, Raffaelli, D, Rasmussen, J, Raybould, A, Reboud, X, Richard, G, Scherber, C, Scheu, S, Sutherland, WJ, Tamaddoni-Nezhad, A, ter Braak, C, Termansen, M, Thompson, MSA, Tscharntke, T, Vacher, C, van der Geest, H, Voigt, W, Vonk, A, Zhou, X & Woodward, G (2016). 'Networking Our Way to Better Ecosystem Service Provision' Trends in Ecology and Evolution, vol 31, no. 2, 105-115.
  • Miller, M, Williams, DE, Huntington, BE, Piniak, GA & Vermeij, MJA (2016). 'Decadal comparison of a diminishing coral community: A study using demographics to advance inferences of community status' PeerJ, vol 4, e1643.
  • Rix, L, de Goeij, JM, Mueller, CE, Struck, U, Middelburg, JJ, van Duyl, FC, Al-Horani, FA, Wild, C, Naumann, MS & van Oevelen, D (2016). 'Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems' Scientific Reports, vol 6, 18715.
  • Carboni, A, Helmus, R, Parsons, JR, Kalbitz, K & de Voogt, P (2016). 'A method for the determination of fullerenes in soil and sediment matrices using ultra-high performance liquid chromatography coupled with heated electrospray quadrupole time of flight mass spectrometry' Journal of Chromatography A, vol 1433, 123-130.
  • Carboni, A, Helmus, R, Emke, E, van den Brink, N, Parsons, JR, Kalbitz, K & de Voogt, P 2016, 'Analysis of fullerenes in soils samples collected in The Netherlands' Environmental Pollution, vol 219,  47-55.
  • Ismail, A, Ktari, L, Ahmed, M, Bolhuis, H, Boudabbous, A, Stal, LJ, Cretoiu, MS & El Bour, M (2016). 'Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica' Frontiers in Microbiology, vol 7, 1072.
  • Visser, PM, Ibelings, BW, Bormans, M & Huisman, J (2016). 'Artificial mixing to control cyanobacterial blooms: a review' Aquatic Ecology, vol 50, no. 3,  423-441.
  • Boix, C, Ibáñez, M, Sancho, JV, Parsons, JR, de Voogt, P & Hernández, F (2016). 'Biotransformation of pharmaceuticals in surface water and during waste water treatment: identification and occurrence of transformation products' Journal of Hazardous Materials, vol 302, 175-187.
  • Maat, DS & Brussaard, CPD (2016). 'Both phosphorus- and nitrogen limitation constrain viral proliferation in marine phytoplankton' Aquatic Microbial Ecology, vol 77, no. 2, 87-97.
  • Widder, S, Allen, RJ, Pfeiffer, T, Curtis, TP, Wiuf, C, Sloan, WT, Cordero, OX, Brown, SP, Momeni, B, Shou, W, Kettle, H, Flint, HJ, Haas, AF, Laroche, B, Kreft, JU, Rainey, PB, Freilich, S, Schuster, S, Milferstedt, K, van der Meer, JR, Groβkopf, T, Huisman, J, Free, A, Picioreanu, C, Quince, C, Klapper, I, Labarthe, S, Smets, BF, Wang, H & Soyer, OS (2016). ' Challenges in microbial ecology: building predictive understanding of community function and dynamics' The ISME Journal, vol 10, 2557-2568.
  • Lavtizar, V, Berggren, K, Trebse, P, Kraak, MHS, Verweij, RA & van Gestel, CAM (2016). 'Comparative ecotoxicity of chlorantraniliprole to non-target soil invertebrates' Chemosphere, vol 159, 473-479.
  • Baz-Lomba, JA, Salvatore, S, Gracia-Lor, E, Bade, R, Castiglioni, S, Castrignano, E, Causanilles, A, Hernandez, F, Kasprzyk-Hordern, B, Kinyua, J, McCall, A-K, van Nuijs, ALN, Ort, C, Plósz, BG, Ramin, P, Reid, M, Rousis, RI, Ryu, Y,  de Voogt, P, Bramness, J & Thomas, KV (2016). 'Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities' BMC Public Health, vol 16, 1035.
  • Melton, ED, Sorokin, DY, Overmars, L, Chertkov, O, Clum, A, Pillay, M, Ivanova, N, Shapiro, N, Kyrpides, NC, Woyke, T, Lapidus, AL & Muyzer, G (2016). 'Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes' Standards in Genomic Sciences, vol 11, 67.
  • Causanilles, A, Emke, E & de Voogt, P (2016). 'Determination of phosphodiesterase type V inhibitors in wastewater by direct injection followed by liquid chromatography coupled to tandem mass spectrometry' Science of the Total Environment, vol 565, 140-147.
  • Sandrini, G, Tann, RP, Schuurmans, JM, van Beusekom, SAM, Matthijs, HCP & Huisman, J (2016). 'Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom' Frontiers in Microbiology, vol 7, 551.
  • Sjollema, SB, Redondo-Hasselerharm, P, Leslie, HA, Kraak, MHS & Vethaak, AD (2016). 'Do plastic particles affect microalgal photosynthesis and growth?' Aquatic Toxicology, vol 170, 259-261.
  • Webb, AL, Leedham-Elvidge, E, Hughes, C, Hopkins, FE, Malin, G, Bach, LT, Schulz, K, Crawfurd, K, Brussaard, CPD, Stuhr, A, Riebesell, U & Liss, PS (2016). 'Effect of ocean acidification and elevated fCO2 on trace gas production by a Baltic Sea summer phytoplankton community' Biogeosciences, vol 13, no. 15, 4595-4613.
  • Brock, TCM, Bas, DA, Belgers, JDM, Bibbe, L, Boerwinkel, M-C, Crum, SJH, Diepens, NJ, Kraak, MHS, Vonk, JA & Roessink, I (2016). 'Effects of sediment-spiked lufenuron on benthic macroinvertebrates in outdoor microcosms and single- species toxicity tests' Aquatic Toxicology, vol 177, 464-475.
  • Bade, R, Causanilles, A, Emke, E, Bijlsma, L, Sancho, JV, Hernandez, F & de Voogt, P (2016). 'Facilitating high resolution mass spectrometry data processing for screening of environmental water samples: An evaluation of two deconvolution tools' Science of the Total Environment, vol 569-570,  434-441.
  • Chamberland, VF, Petersen, D, Latijnhouwers, KRW, Snowden, S, Mueller, B & Vermeij, MJA (2016). 'Four-year-old Caribbean Acropora colonies reared from field-collected gametes are sexually mature' Bulletin of Marine Science, vol 92, no. 2, 263-264.
  • Bernal, MA, Floeter, SR, Gaither, MR, Longo, GO, Morais, R, Ferreira, CEL, Vermeij, MJA & Rocha, LA (2016). 'High prevalence of dermal parasites among coral reef fishes of Curaçao' Marine Biodiversity, vol 46, no. 1, 67-74.
  • Dimzon, IK, Trier, X, Frömel, T, Helmus, R, Knepper, TP & de Voogt, P (2016) 'High Resolution Mass Spectrometry of Polyfluorinated Polyether - based Formulation' Journal of the American Society for Mass Spectrometry, vol 27, no. 2, 309-318.
  • Visser, PM, Verspagen, JMH, Sandrini, G, Stal, LJ, Matthijs, HCP, Davis, TW, Paerl, HW & Huisman, J (2016). 'How rising CO2 and global warming may stimulate harmful cyanobacterial blooms' Harmful Algae, vol 54, 145-159.
  • Hoppe, M, de Voogt, P & Franz, R (2016). 'Identification and quantification of oligomers as potential migrants in plastics food contact materials with a focus in polycondensates - A review' Trends in Food Science & Technology, vol 50, 118- 130.
  • Brussaard, CPD, Peperzak, L, Beggah, S, Wick, LY, Wuerz, B, Weber, J, Arey, JS, van der Burg, B, Jonas, A, Huisman, J & van der Meer, JR (2016). 'Immediate ecotoxicological effects of short-lived oil spills on marine biota' Nature Communications, vol 7, 11206.
  • Salman, V, Berben, T, Bowers, RM, Woyke, T, Teske, A & Angert, ER (2016). 'Insights into the single cell draft genome of "Candidatus Achromatium palustre"' Standards in Genomic Sciences, vol 11, 28.
  • Mojica, KDA, Huisman, J, Wilhelm, SW & Brussaard, CPD (2016). 'Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean' The ISME Journal, vol 10, no. 2, 500-513.
  • Vavourakis, CD, Ghai, R, Rodriguez-valera, F, Sorokin, DY, Tringe, SG, Hugenholtz, P & Muyzer, G (2016). 'Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines' Frontiers in Microbiology, vol 7, 211.
  • Markus, AA, Parsons, JR, Roex, EWM, de Voogt, P & Laane, RWPM (2016). 'Modelling the transport of engineered metallic nanoparticles in the river Rhine' Water Research, vol 91, 214-224.
  • Vorenhout, M (2016). 'Preserving Medieval Farm Mounds in a Large Stormwater Retention Area' Conservation and Management of Archaeological Sites, vol 18, no. 1-3, 297-307.
  • Sandrini, G, Ji, X, Verspagen, JMH, Tann, RP, Slot, PC, Luimstra, VM, Schuurmans, JM, Matthijs, HCP & Huisman, J (2016). 'Rapid adaptation of harmful cyanobacteria to rising CO2' Proceedings of the National Academy of Sciences of the United States of America, vol 113, no. 33,9315-9320.
  • Wigington, CH, Sonderegger, D, Brussaard, CPD, Buchan, A, Finke, JF, Fuhrman, JA, Lennon, JT, Middelboe, M, Suttle, CA, Stock, C, Wilson, WH, Wommack, KE, Wilhelm, SW & Weitz, JS (2016). 'Re-examination of the relationship between marine virus and microbial cell abundances' Nature Microbiology, vol 1, no. 3, 15024.
  • Vandrup Martens, V, Bergersen, O, Vorenhout, M, Utigard Sandvik, P & Hollesen, J (2016). 'Research and Monitoring on Conservation State and Preservation Conditions in Unsaturated Archaeological Deposits of a Medieval Farm Mound in Troms and a Late Stone Age Midden in Finnmark, Northern Norway' Conservation and Management of Archaeological Sites, vol 18, no. 1-3, 8-29.
  • Cúcio, C, Engelen, AH, Costa, R & Muyzer, G (2016).  'Rhizosphere microbiomes of European seagrasses are selected by the plant, but are not species specific' Frontiers in Microbiology, vol 7, 440.
  • Hester, ER, Barott, KL, Nulton, J, Vermeij, MJA & Rohwer, FL (2016). 'Stable and sporadic symbiotic communities of coral and algal holobionts' The ISME Journal, vol 10, no. 5, 1157-1169.
  • Ramin, P, Libonati Brock, A, Polesel, F, Causanilles, A, Emke, E, de Voogt, P & Plósz, BG (2016). 'Transformation and sorption of illicit drug biomarkers in sewer systems: understanding the role of suspended solids in raw wastewater.' Environmental Science and Technology.
  • Burson, A, Stomp, M, Akil, L, Brussaard, CPD & Huisman, J (2016). 'Unbalanced reduction of nutrient loads has created an offshore gradient from phosphorus to nitrogen limitation in the North Sea' Limnology and Oceanography, vol 61, no. 3, 869-888.

2015

  • Mulder, C, Bennett, EM, Bohan, DA, Bonkowski, M, Carpenter, SR, Chalmers, R, Cramer, W, Durance, I, Eisenhauer, N, Fontaine, C, Haughton, AJ, Hettelingh, JP, Hines, J, Ibanez, S, Jeppesen, E, Adams Krumins, J, Ma, A, Mancinelli, G, Massol, F, McLaughlin, Ó, Naeem, S, Pascual, U, Peñuelas, J, Pettorelli, N, Pocock, MJO, Raffaelli, D, Rasmussen, JJ, Rusch, GM, Scherber, C, Setälä, H, Sutherland, WJ, Vacher, C, Voigt, W, Vonk, JA, Wood, SA & Woodward, G 2015, '10 Years later: Revisiting priorities for science and society a decade after the Millennium Ecosystem Assessment' Advances in Ecological Research, vol 53, pp. 1-53.
  • Barmentlo, SH, Stel, JM, van Doorn, M, Eschauzier, C, de Voogt, P & Kraak, MHS 2015, 'Acute and chronic toxicity of short chained perfluoroalkyl substances to Daphnia magna' Environmental Pollution, vol 198, pp. 47-53.
  • de Boer, EJ, Vélez, MI, Rijsdijk, KF, de Louw, PGB, Vernimmen, TJJ, Visser, PM, Tjallingii, R & Hooghiemstra, H 2015, 'A deadly cocktail: How a drought around 4200 cal. yr BP caused mass mortality events at the infamous ‘dodo swamp’in Mauritius' Holocene, vol 25, no. 5, pp. 758-771.
  • Hofman-Caris, RCM, Bäuerlein, PS, Siegers, WG, Ziaie, J, Tolkamp, HH & de Voogt, P 2015, 'Affinity adsorption for the removal of organic micropollutants in drinking water sources; proof of principle' Water Science and Technology: Water Supply, vol 15, no. 6, pp. 1207-1219.
  • Carreira, C, Staal, M, Middelboe, M & Brussaard, CPD 2015, 'Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms' Limnology and Oceanography, Methods, vol 13, no. 4, pp. 169-177.
  • Alexander, BE, Mueller, B, Vermeij, MJA, van der Geest, HHG & de Goeij, JM 2015, 'Biofouling of inlet pipes affects water quality in running seawater aquaria and compromises sponge cell proliferation' PeerJ, vol 3, e1430.
  • Salman, V, Yang, T, Berben, T, Klein, F, Angert, E & Teske, A 2015, 'Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh' The ISME Journal, vol 9, no. 11, pp. 2503-2514.
  • Haas, AF, Guibert, M, Foerschner, A, Co, T, Calhoun, S, George, E, Hatay, M, Dinsdale, E, Sandin, SA, Smith, JE, Vermeij, MJA, Felts, B, Dustan, P, Salamon, P & Rohwer, F 2015, 'Can we measure beauty? Computational evaluation of coral reef aesthetics' PeerJ, vol 3, e1390.
  • Alexander, BE, Achlatis, M, Osinga, R, van der Geest, HG, Cleutjens, JPM, Schutte, B & de Goeij, JM 2015, 'Cell kinetics during regeneration in the sponge Halisarca caerulea: how local is the response to tissue damage?' PeerJ, vol 3, e820.
  • Sandrini, G, Cunsolo, S, Schuurmans, JM, Matthijs, HCP & Huisman, J 2015, 'Changes in gene expression, cell physiology and toxicity of the harmful cyanobacterium Microcystis aeruginosa at elevated CO2' Frontiers in Microbiology, vol 6, 401.
  • Astefanei, A, Kok, WT, Bäuerlein, P, Núñez, O, Galceran, MT, de Voogt, P & Schoenmakers, PJ 2015, 'Characterization of aggregates of surface modified fullerenes by asymmetrical flow field-flow fractionation with multi angle light scattering detection' Journal of Chromatography A, vol 1408, pp. 197-206.
  • Corsini, A, Colombo, M, Muyzer, G & Cavalca, L 2015, 'Characterization of the arsenite oxidizer Aliihoeflea sp. strain 2WW and its potential application in the removal of arsenic from groundwater in combination with Pf-ferritin' Antonie van Leeuwenhoek, vol 108, no. 3, pp. 673-684.
  • Haftka, JJH, Bäuerlein, PS, Emke, E, Lammertse, N, Belokhovstova, D, Hilvering, B, de Voogt, P & ter Laak, TL 2015, ' Colloidal stability of (functionalised) fullerenes in the presence of dissolved organic carbon and electrolytes' Environmental Science: Nano, vol 2, no. 3, pp. 280-287.
  • Weenink, FJ, Luimstra, VM, Schuurmans, JM, van Herk, MJ, Visser, PM & Matthijs, HCP 2015, 'Combatting cyanobacteria with hydrogen peroxide: A laboratory study on the consequences for phytoplankton community and diversity' Frontiers in Microbiology, vol 6, 714.
  • Cousins, IT, Balan, SA, Scheringer, M, Weber, R, Wang, Z, Blum, A, Diamond, M, Fletcher, T, Goldenman, G, Higgins, C, Lindeman, AE, Peaslee, G, Trier, X & de Voogt, P 2015, 'Comment on "Fluorotechnology Is Critical to Modern Life: The FluoroCouncil Counterpoint to the Madrid Statement"' Environmental Health Perspectives, vol 123, pp. A170.
  • Moerdijk-Poortvliet, TCW, Schierbeek, H, Houtekamer, M, van Engeland, T, Derrien, D, Stal, LJ & Boschker, HTS 2015, ' Comparison of gas chromatography/isotope ratio mass spectrometry and liquid chromatography/isotope ratio mass spectrometry for carbon stable-isotope analysis of carbohydrates' Rapid Communications in Mass Spectrometry, vol 29, no. 13, pp. 1205-1214.
  • Schuurmans, RM, van Alphen, P, Schuurmans, JM, Matthijs, HCP & Hellingwerf, KJ 2015, 'Comparison of the Photosynthetic Yield of Cyanobacteria and Green Algae: Different Methods Give Different Answers' PLoS One, vol 10, no. 9, e0139061.
  • Brauer, VS, Stomp, M, Bouvier, T, Fouilland, E, Leboulanger, C, Confurius-Guns, V, Weissing, FJ, Stal, LJ & Huisman, J 2015, 'Competition and facilitation between the marine nitrogen-fixing cyanobacterium Cyanothece and its associated bacterial community' Frontiers in Microbiology, vol 5, 795.
  • Berben, T, Sorokin, DY, Ivanova, N, Pati, A, Kyrpides, N, Goodwin, LA, Woyke, T & Muyzer, G 2015, 'Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur- oxidizing bacterium isolated from a Kenyan soda lake' Standards in Genomic Sciences, vol 10, 105.
  • Carreira, C, Staal, M, Middelboe, M & Brussaard, CPD 2015, 'Counting viruses and bacteria in photosynthetic microbial mats' Applied and Environmental Microbiology, vol 81, no. 6, pp. 2149-2155.
  • Hartmann, AC, Sandin, SA, Chamberland, VF, Marhaver, KL, de Goeij, JM & Vermeij, MJA 2015, 'Crude oil contamination interrupts settlement of coral larvae after direct exposure ends' Marine Ecology - Progress Series, vol 536, pp. 163-173.
  • Muntyan, MS, Cherepanov, DA, Malinen, AM, Bloch, DA, Sorokin, DY, Severina, II, Ivashina, TV, Lahti, R, Muyzer, G & Skulachev, VP 2015, 'Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase' Proceedings of the National Academy of Sciences of the United States of America, vol 112, no. 25, pp. 7695-7700.
  • Lavtižar, V, Helmus, R, Kools, SAE, Dolenc, D, van Gestel, CAM, Trebše, P, Waaijers, SL & Kraak, MHS 2015, 'Daphnid life cycle responses to the insecticide chlorantraniliprole and its transformation products' Environmental Science and Technology, vol 49, no. 6, pp. 3922-3929.
  • ten Tusscher, GW, Leijs, MM, Koppe, JG, Olie, K, de Voogt, P & van Aalderen, WMC 2015, 'Decrease in lung function in relation to increasing BDE exposure in teenagers' The European Respiratory Journal, vol 46, no. suppl 59, pp. 4097.
  • Bongaerts, P, Frade, PR, Hay, KB, Englebert, N, Latijnhouwers, KRW, Bak, RPM, Vermeij, MJA & Hoegh-Guldberg, O 2015, 'Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community' Scientific Reports, vol 5, 7652.
  • Fan, H, Bolhuis, H & Stal, LJ 2015, 'Denitrification and the denitrifier community in a coastal microbial mats' FEMS Microbiology Ecology, vol 91, no. 3, fiu033.
  • Emke, E, Sanchis, J, Farré, M, Bäuerlein, PS & de Voogt, P 2015, 'Determination of several fullerenes in sewage water by LC hr-MS using atmospheric pressure photoionisation' Environmental Science: Nano, vol 2, no. 2, pp. 167-176.
  • Carreira, C, Staal, M, Falkoski, D, de Vries, RP, Middelboe, M & Brussaard, CPD 2015, 'Disruption of photoautotrophic intertidal mats by filamentous fungi' Environmental Microbiology, vol 17, no. 8, pp. 2910-2921.
  • Bartonova, A, Beausoleil, C, Carroquino, MJ, de Voogt, P, Duarte-Davidson, R, Fernandes, T, Gzyl, J, Janssen, C, Linders, J, Schoeters, G & Krätke, R 2015, 'Does the EU migration levels of chromium VI in toys need to be lowered?' Regulatory toxicology and pharmacology, vol 73, no. 2, pp. 687-688.
  • Fan, H, Bolhuis, H & Stal, LJ 2015, 'Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments' Frontiers in Microbiology, vol 6, 738.
  • Brolsma, KM, Vonk, JA, Hoffland, E, Mulder, C & de Goede, RGM 2015, 'Effects of GM potato Modena on soil microbial activity and litter decomposition fall within the range of effects found for two conventional cultivars' Biology and Fertility of Soils, vol 51, no. 8, pp. 913-922.
  • Jansen, M, Coors, A, Vanoverbeke, J, Schepens, M, de Voogt, P, De Schampelaere, KAC & De Meester, L 2015, ' Experimental evolution reveals high insecticide tolerance in Daphnia inhabiting farmland ponds' Evolutionary Applications, vol 8, no. 5, pp. 442-453.
  • Bale, NJ, Maat, DS, Hopmans, EC, Mets, A, Sinninghe Damsté, JS, Brussaard, CPD & Schouten, S 2015, 'Fatty acid dynamics during viral infection of Phaeocystis globosa' Aquatic Microbial Ecology, vol 74, no. 1, pp. 85-94.
  • Sorokin, DY, Banciu, HL & Muyzer, G 2015, 'Functional microbiology of soda lakes' Current opinion in microbiology, vol 25, pp. 88-96.
  • Chronopoulou, PM, Sanni, GO, Silas-Olu, DI, van der Meer, JR, Timmis, KN, Brussaard, CPD & McGenity, TJ 2015, ' Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea' Microbial Biotechnology, vol 8, no. 3, pp. 434-447.
  • Burridge, AK, Goetze, E, Raes, N, Huisman, J & Peijnenburg, KTCA 2015, 'Global biogeography and evolution of Cuvierina pteropods' BMC Evolutionary Biology, vol 15, 39.
  • Terzic, O, Gregg, H & de Voogt, P 2015, 'Identification of chemicals relevant to the Chemical Weapons Convention using the novel sample-preparation methods and strategies of the Mobile Laboratory of the Organization for the Prohibition of Chemical Weapons' Trends in Analytical Chemistry, vol 65, pp. 151-166.
  • Garg, N, Kapono, CA, Lim, YW, Koyama, N, Vermeij, MJA, Conrad, D, Rohwer, F & Dorrestein, PC 2015, 'Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures' International Journal of Mass Spectrometry, vol 377, pp. 719-727.
  • Carreira, C, Piel, T, Staal, M, Stuut, JBW, Middelboe, M & Brussaard, CPD 2015, 'Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats' SpringerPlus, vol 4, 239.
  • Markus, AA, Parsons, JR, Roex, EWM, de Voogt, P & Laane, RWPM 2015, 'Modeling aggregation and sedimentation of nanoparticles in the aquatic environment' Science of the Total Environment, vol 506-507, pp. 323-329.
  • Korsman, JC, Schipper, AM, de Vos, MG, van den Heuvel-Greve, MJ, Vethaak, AD, de Voogt, P & Hendriks, AJ 2015, ' Modeling bioaccumulation and biomagnification of nonylphenol and its ethoxylates in estuarine-marine food chains' Chemosphere, vol 138, pp. 33-39.
  • Vermeij, MJA, Debey, H, Grimsditch, G, Brown, J, Obura, D, DeLeon, R & Sandin, SA 2015, 'Negative effect of gardening damselfish Stegastes planifrons on coral health depend on predator abundance' Marine Ecology - Progress Series, vol 528, pp. 289-296.
  • Martínez Martínez, J, Boere, A, Gilg, I, van Lent, JWM, Witte, HJ, van Bleijswijk, JDL & Brussaard, CPD 2015, 'New lipid envelop-containing dsDNA virus isolates infecting Micromonas pusilla reveal a separate phylogenetic group' Aquatic Microbial Ecology, vol 74, no. 1, pp. 17-28.
  • Fan, H, Bolhuis, H & Stal, LJ 2015, 'Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat' Frontiers in Microbiology, vol 6, 1367.
  • D'Hollander, W, Herzke, D, Huber, S, Hajslova, J, Pulkrabova, J, Brambilla, G, De Filippis, SP, Bervoets, L & de Voogt, P 2015, 'Occurrence of perfluorinated alkylated substances in cereals, salt, sweets and fruit items collected in four European countries' Chemosphere, vol 129, pp. 179-185.
  • Berben, T, Sorokin, DY, Ivanova, N, Pati, A, Kyrpides, N, Goodwin, LA, Woyke, T & Muyzer, G 2015, 'Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T' Standards in Genomic Sciences, vol 10, 85.
  • Berben, T, Sorokin, DY, Ivanova, N, Pati, A, Kyrpides, N, Goodwin, LA, Woyke, T & Muyzer, G 2015, 'Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification' Standards in Genomic Sciences, vol 10, 84.
  • Gieskes, WWC, Laane, RWPM & Ruardij, P 2015, 'Photo-oxidation: Major sink of oxygen in the ocean surface layer' Marine Chemistry, vol 177, no. 3, pp. 472-475.
  • Mojica, KDA, van de Poll, WH, Kehoe, MJ, Huisman, J, Timmermans, KR, Buma, AGJ, van der Woerd, HJ, Hahn- Woernle, L, Dijkstra, HA & Brussaard, CPD 2015, 'Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean' Limnology and Oceanography, vol 60, no. 5, pp. 1498-1521.
  • Sandrini, G, Huisman, J & Matthijs, HCP 2015, 'Potassium sensitivity differs among strains of the harmful cyanobacterium Microcystis and correlates with the presence of salt tolerance genes' FEMS Microbiology Letters, vol 362, no. 16, fnv121.
  • Herman, P, Warwick, R, Aller, R, Arvanitidis, C, Hewitt, J, Stal, L & Vincx, M 2015, 'Protecting marine biodiversity to preserve ecosystem functioning: A tribute to Carlo Heip' Journal of Sea Research, vol 98, pp. 1-3.
  • Marhaver, KL, Vermeij, MJA & Medina, MM 2015, 'Reproductive natural history and successful juvenile propagation of the threatened Caribbean Pillar Coral Dendrogyra cylindrus' BMC Ecology, vol 15, 9.
  • Hunting, ER, Vijver, MG, van der Geest, HG, Mulder, C, Kraak, MHS, Breure, AM & Admiraal, W 2015, 'Resource niche overlap promotes stability of bacterial community metabolism in experimental microcosms' Frontiers in Microbiology, vol 6, 105.
  • Chamberland, VF, Vermeij, MJA, Brittsan, M, Carl, M, Schick, M, Snowden, S, Schrier, A & Petersen, D 2015, ' Restoration of critically endangered elkhorn coral (Acropora palmata) populations using larvae reared from wild-caught gametes' Global Ecology and Conservation, vol 4, pp. 526-537.
  • Herrero, P, Bäuerlein, PS, Emke, E, Marcé, RM & de Voogt, P 2015, 'Size and concentration determination of (functionalised) fullerenes in surface and sewage water matrices using field flow fractionation coupled to an online accurate mass spectrometer: Method development and validation' Analytica Chimica Acta, vol 871, pp. 77-84.
  • Beninca, E, Ballantine, B, Ellner, SP & Huisman, J 2015, 'Species fluctuations sustained by a cyclic succession at the edge of chaos' Proceedings of the National Academy of Sciences of the United States of America, vol 112, no. 20, pp. 6389-6394.
  • Sandrini, G, Jakupovic, D, Matthijs, HCP & Huisman, J 2015, 'Strains of the Harmful Cyanobacterium Microcystis aeruginosa Differ in Gene Expression and Activity of Inorganic Carbon Uptake Systems at Elevated CO2 Levels' Applied and Environmental Microbiology, vol 81, no. 22, pp. 7730-7739.
  • Bonin, P, Vieira, C, Grimaud, R, Militon, C, Cuny, P, Lima, O, Guasco, S, Brussaard, CPD & Michotey, V 2015, ' Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus' Environmental Science and Pollution Research, vol 22, no. 20, pp. 15347-15359.
  • Goldenberg Vilar, A, Vonk, JA, Bichebois, S, van Dam, H, Admiraal, W & van der Geest, HG 2015, 'Suspended organic particles drive the development of attached algal communities in degraded peatlands' Hydrobiologia, vol 744, no. 1, pp. 211-221.
  • Javaheri, N, Dries, R, Burson, A, Stal, LJ, Sloot, PMA & Kaandorp, JA 2015, 'Temperature affects the silicate morphology in a diatom' Scientific Reports, vol 5, 11652.
  • Whatley, MH, Vonk, JA, van der Geest, HG & Admiraal, W 2015, 'Temporal abiotic variability structures invertebrate communities in agricultural drainage ditches' limnologica, vol 52, pp. 20-29.
  • Blum, A, Balan, SA, Scheringer, M, Trier, X, Goldenman, G, Cousins, IT, Diamond, M, Fletcher, T, Higgins, C, Lindeman, AE, Peaslee, G, de Voogt, P, Wang, Z & Weber, R 2015, 'The Madrid statement on poly- and perfluoroalkyl substances (PFASs)' Environmental Health Perspectives, vol 123, no. 5, pp. A107-A111.
  • Booij, P, Sjollema, SB, van der Geest, HG, Leonards, PEG, Lamoree, MH, de Voogt, WP, Admiraal, W, Laane, RWPM & Vethaak, AD 2015, 'Toxic pressure of herbicides on microalgae in Dutch estuarine and coastal waters' Journal of Sea Research, vol 102, pp. 48-56.
  • Bassin, JP, Abbas, B, Vilela, CLS, Kleerebezem, R, Muyzer, G, Rosado, AS, van Loosdrecht, MCM & Dezotti, M 2015, ' Tracking the dynamics of heterotrophs and nitrifiers in moving-bed biofilm reactors operated at different COD/N ratios' Bioresource Technology, vol 192, pp. 131-141.
  • Makower, AK, Schuurmans, JM, Groth, D, Zilliges, Y, Matthijs, HCP & Dittmann, E 2015, 'Transcriptomics-Aided Dissection of the Intracellular and Extracellular Roles of Microcystin in Microcystis aeruginosa PCC 7806' Applied and Environmental Microbiology, vol 81, no. 2, pp. 544-554.
  • Vonk, JA, Christianen, MJA, Stapel, J & O’Brien, KR 2015, 'What lies beneath: why knowledge of belowground biomass dynamics is crucial to effective seagrass management' Ecological Indicators, vol 57, pp. 259-267.

2014

  • Luimstra, VM, Kennedy, SJ, Güttler, J, Wood, SA, Williams, DE & Packer, MA 2014, 'A cost-effective microbial fuel cell to detect and select for photosynthetic electrogenic activity in algae and cyanobacteria' Journal of applied phycology, vol 26, no. 1, pp. 15-23.
  • Maat, DS, Bale, NJ, Hopmans, EC, Baudoux, AC, Sinninghe Damsté, JS, Schouten, S & Brussaard, CPD 2014, ' Acquisition of intact polar lipids from the prymnesiophyte Phaeocystis globosa by its lytic virus PgV-07T' Biogeosciences, vol 11, no. 1, pp. 185-194.
  • Corsini, A, Zaccheo, P, Muyzer, G, Andreoni, V & Cavalca, L 2014, 'Arsenic transforming abilities of groundwater bacteria and the combined use of Aliihoeflea sp. strain 2WW and goethite in metalloid removal' Journal of Hazardous Materials, vol 269, pp. 89-97.
  • Moerdijk-Poortvliet, TCW, Brasser, J, de Ruiter, G, Houtekamer, M, Bolhuis, H, Stal, LJ & Boschker, HTS 2014, 'A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry' Rapid Communications in Mass Spectrometry, vol 28, no. 12, pp. 1401- 1411.
  • Ahmed, M, Stal, LJ & Hasnain, S 2014, 'Biofilm formation and indole-3-acetic acid production by two rhizospheric unicellular cyanobacteria' Journal of Microbiology and Biotechnology, vol 24, no. 8, pp. 1015-1025.
  • Wilken, S, Verspagen, JMH, Naus-Wiezer, S, van Donk, E & Huisman, J 2014, 'Biological control of toxic cyanobacteria by mixotrophic predators: an experimental test of intraguild predation theory' Ecological Applications, vol 24, no. 5, pp. 1235- 1249.
  • Alexander, BE, Liebrand, K, Osinga, R, van der Geest, HG, Admiraal, W, Cleutjens, JPM, Schutte, B, Verheyen, F, Ribes, M, van Loon, E & de Goeij, JM 2014, 'Cell turnover and detritus production in marine sponges from tropical and temperate benthic ecosystems' PLoS One, vol 9, no. 10, pp. e109486.
  • Mulling, BTM, Soeter, AM, van der Geest, HG & Admiraal, W 2014, 'Changes in the planktonic microbial community during residence in a surface flow constructed wetland used for tertiary wastewater treatment' Science of the Total Environment, vol 466-467, pp. 881-887.
  • D'Hollander, W, De Bruyn, L, Hagenaars, A, de Voogt, P & Bervoets, L 2014, 'Characterisation of perfluorooctane sulfonate (PFOS) in a terrestrial ecosystem near a fluorochemical plant in Flanders, Belgium' Environmental Science and Pollution Research International, vol 21, no. 20, pp. 11856-11866.
  • Wilken, S, Verspagen, JMH, Naus-Wiezer, S, van Donk, E & Huisman, J 2014, 'Comparison of predator-prey interactions with and without intraguild predation by manipulation of the nitrogen source' Oikos, vol 123, no. 4, pp. 423-432.
  • Verspagen, JMH, van de Waal, DB, Finke, JF, Visser, PM & Huisman, J 2014, 'Contrasting effects of rising CO2 on primary production and ecological stoichiometry at different nutrient levels' Ecology Letters, vol 17, no. 8, pp. 951-960.
  • Verdonschot, PFM, Besse-Lototskaya, AA, Dekkers, TBM & Verdonschot, RCM 2014, 'Directional movement in response to altered flow in six lowland stream Trichoptera' Hydrobiologia, vol 740, no. 1, pp. 219-230.
  • Oueriaghli, N, González-Domenech, CM, Martínez-Checa, F, Muyzer, G, Ventosa, A, Quesada, E & Béjar, V 2014, ' Diversity and distribution of Halomonas in Rambla Salada, a hypersaline environment in the southeast of Spain' FEMS Microbiology Ecology, vol 87, no. 2, pp. 460-474.
  • Agawin, NSR, Benavides, M, Busquets, A, Ferriol, P, Stal, LJ & Arístegui, J 2014, 'Dominance of unicellular cyanobacteria in the diazotrophic community in the Atlantic Ocean' Limnology and Oceanography, vol 59, no. 3, pp. 623-637.
  • Wilken, S, Schuurmans, JM & Matthijs, HCP 2014, 'Do mixotrophs grow as photoheterotrophs? Photophysiological acclimation of the chrysophyte Ochromonas danica after feeding' New Phytologist, vol 204, no. 4, pp. 882-889.
  • Dorgelo, J, van der Geest, HG & Hunting, ER 2014, 'Dynamics of natural populations of the dertitivorous mudsnail Potamopyrgus antipodarum (gray) (Hydrobiidae) in two interconnected lakes differing in trophic state' SpringerPlus, vol 3, pp. 736.
  • Corsini, A, Cavalca, L, Muyzer, G & Zaccheo, P 2014, 'Effectiveness of various sorbents and biological oxidation in the removal of arsenic species from groundwater' Environmental Chemistry, vol 11, no. 5, pp. 558-565.
  • Mueller, B, van der Zande, RM, van Leent, PJM, Meesters, EH, Vermeij, MJA & van Duyl, FC 2014, 'Effect of light availability on dissolved organic carbon release by Caribbean reef algae and corals' Bulletin of Marine Science, vol 90, no. 3, pp. 875-893.
  • Maat, DS, Crawfurd, KJ, Timmermans, KR & Brussaard, CPD 2014, 'Elevated CO2 and Phosphate Limitation Favor Micromonas pusilla through Stimulated Growth and Reduced Viral Impact' Applied and Environmental Microbiology, vol 80, no. 10, pp. 3119-3127.
  • Goldenberg Vilar, A, van Dam, H, van Loon, EE, Vonk, JA, van der Geest, HG & Admiraal, W 2014, 'Eutrophication decreases distance decay of similarity in diatom communities' Freshwater Biology, vol 59, no. 7, pp. 1522-1531.
  • Mojica, KDA & Brussaard, CPD 2014, 'Factors affecting virus dynamics and microbial host-virus interactions in marine environments' FEMS Microbiology Ecology, vol 89, no. 3, pp. 495-515.
  • Gros, J, Nabi, D, Würz, B, Wick, LY, Brussaard, CPD, Huisman, J, van der Meer, JR, Reddy, CM & Arey, JS 2014, 'First day of an oil spill on the open sea: Early mass transfers of hydrocarbons to air and water' Environmental Science and Technology, vol 48, no. 16, pp. 9400-9411.
  • Mojica, KDA, Evans, C & Brussaard, CPD 2014, 'Flow cytometric enumeration of marine viral populations at low abundances' Aquatic Microbial Ecology, vol 71, pp. 203-209.
  • Sandrini, G, Matthijs, HCP, Verspagen, JMH, Muyzer, G & Huisman, J 2014, 'Genetic diversity of inorganic carbon uptake systems causes variation in CO2 response of the cyanobacterium Microcystis' The ISME Journal, vol 8, pp. 589-600.
  • Visser, M, Parshina, SN, Alves, JI, Sousa, DZ, Pereira, IAC, Muyzer, G, Kuever, J, Lebedinsky, AV, Koehorst, JJ, Worm, P, Plugge, CM, Schaap, PJ, Goodwin, LA, Lapidus, A, Kyrpides, NC, Detter, JC, Woyke, T, Chain, P, Davenport, KW, Spring, S, Rohde, M, Klenk, H-P & Stams, AJM 2014, 'Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans' Standards in Genomic Sciences, vol 9, no. 3, pp.
  • Sorokin, DY, Gumerov, VM, Rakitin, AL, Beletsky, AV, Sinninghe Damsté, JS, Muyzer, G, Mardanov, AV & Ravin, NV 2014, 'Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3' Environmental Microbiology, vol 16, no. 6, pp. 1549- 1565.
  • Kuever, J, Visser, M, Loeffler, C, Boll, M, Worm, P, Sousa, DZ, Plugge, CM, Schaap, PJ, Muyzer, G, Pereira, IAC, Parshina, SN, Goodwin, LA, Kyrpides, NC, Detter, J, Woyke, T, Chain, P, Davenport, KW, Rohde, M, Spring, S, Klenk, H- P & Stams, AJM 2014, 'Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium' Standards in Genomic Sciences, vol 9, no. 3, pp. 821-839.
  • Sjollema, SB, MartínezGarcía, G, van der Geest, HG, Kraak, MHS, Booij, P, Vethaak, AD & Admiraal, W 2014, 'Hazard and risk of herbicides for marine microalgae' Environmental Pollution, vol 187, pp. 106-111.
  • Scheringer, M, Trier, X, Cousins, IT, de Voogt, P, Fletcher, T, Wang, Z & Webster, TF 2014, 'Helsingør Statement on Poly- and Perfluorinated Alkyl Substances (PFASs)' Chemosphere, vol 114, pp. 337-339.
  • Marty, F, Gueuné, H, Malard, E, Sánchez-Amaya, JM, Sjögren, L, Abbas, B, Quillet, L, van Loosdrecht, MCM & Muyzer, G 2014, 'Identification of key factors in Accelerated Low Water Corrosion through experimental simulation of tidal conditions: influence of stimulated indigenous microbiota' BIOFOULING, vol 30, no. 3, pp. 281-297.
  • van Leerdam, JA, Vervoort, J, Stroomberg, G & de Voogt, P 2014, 'Identification of unknown microcontaminants in Dutch river water by liquid chromatography-high resolution mass spectrometry and nuclear magnetic Resonance spectroscopy' Environmental Science and Technology, vol 48, no. 21, pp. 12791-12799.
  • Welsh, JE, van der Meer, J, Brussaard, CPD & Thieltges, DW 2014, 'Inventory of organisms interfering with transmission of a marine trematode' Journal of the Marine Biological Association of the United Kingdom, vol 94, no. 4, pp. 697-702
  • Ahmed, M, Moerdijk-Poortvliet, TCW, Wijnholds, A, Stal, LJ & Hasnain, S 2014, 'Isolation, characterization and localization of extracellular polymeric substances from the cyanobacterium Arthrospira platensis strain MMG-9' European Journal of Phycology, vol 49, no. 2, pp. 143-150.
  • Sjollema, SB, van Beusekom, SAM, van der Geest, HG, Booij, P, de Zwart, D, Vethaak, AD & Admiraal, W 2014, ' Laboratory algal bioassays using PAM fluorometry: effects of test conditions on the determination of herbicide and field sample toxicity' Environmental Toxicology and Chemistry, vol 33, no. 5, pp. 1017-1022.
  • Moerdijk-Poortvliet, TCW, Stal, LJ & Boschker, HTS 2014, 'LC/IRMS analysis: A powerful technique to trace carbon flow in microphytobenthic communities in intertidal sediments' Journal of Sea Research, vol 92, pp. 19-25.
  • Whatley, MH, van Loon, EE, Cerli, C, Vonk, JA, van der Geest, HG & Admiraal, W 2014, 'Linkages between benthic microbial and feshwater insect communities in degraded peatland ditches' Ecological Indicators, vol 46, pp. 415-425.
  • Kelly, LW, Williams, GJ, Barott, KL, Carlson, CA, Dinsdale, EA, Edwards, RA, Haas, AF, Haynes, M, Lim, YW, McDole, T, Nelson, CE, Sala, E, Sandin, SA, Smith, JE, Vermeij, MJA, Youle, M & Rohwer, F 2014, 'Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors' Proceedings of the National Academy of Sciences of the United States of America, vol 111, no. 28, pp. 10227-10232.
  • Steenhauer, LM, Pollard, PC, Brussaard, CPD & Säwström, C 2014, 'Lysogenic infection in sub-tropical freshwater cyanobacteria cultures and natural blooms' Marine and Freshwater research, vol 65, no. 7, pp. 624-632.
  • Whatley, MH, van Loon, E, van Dam, H, Vonk, JA, van der Geest, HG & Admiraal, W 2014, 'Macrophyte loss drives decadal change in benthic invertebrates in peatland drainage ditches' Freshwater Biology, vol 59, no. 1, pp. 114-126.
  • Pavlov, AK, Silyakova, A, Granskog, MA, Bellerby, RGJ, Engel, A, Schulz, KG & Brussaard, CPD 2014, 'Marine CDOM accumulation during a coastal Arctic mesocosm experiment: No response to elevated pCO2 levels' JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, vol 119, no. 6, pp. 1216-1230.
  • Loayza-Muro, RA, Duivenvoorden, JF, Kraak, MHS & Admiraal, W 2014, 'Metal leaching, acidity and altitude confine benthic macroinvertebrate community composition in Andean streams' Environmental Toxicology and Chemistry, vol 33, no. 2, pp. 404-411.
  • Loayza-Muro, RA, de Baat, M, Palomino, EJ, Kuperus, P, Kraak, MHS, Admiraal, W & Breeuwer, H 2014, 'Metals and altitude drive genetic diversity of chironomids in Andean streams' Freshwater Biology, vol 59, no. 1, pp. 56-63.
  • Sorokin, DY, Berben, T, Melton, ED, Overmars, L, Vavourakis, CD & Muyzer, G 2014, 'Microbial diversity and biogeochemical cycling in soda lakes' Extremophiles, vol 18, no. 5, pp. 791-809.
  • Jurgens, SS, Helmus, R, Waaijers, SL, Uittenbogaard, D, Dunnebier, D, Vleugel, M, Kraak, MHS, de Voogt, P & Parsons, JR 2014, 'Mineralisation and primary biodegradation of aromatic organophosphorus flame retardants in activated sludge' Chemosphere, vol 111, pp. 238-242.
  • Bolhuis, H, Cretoiu, MS & Stal, LJ 2014, 'Molecular ecology of microbial mats' FEMS Microbiology Ecology, vol 90, no. 2, pp. 335-350.
  • Mueller, B, de Goeij, JM, Vermeij, MJA, Mulders, Y, van der Ent, E, Ribes, M & van Duyl, FC 2014, 'Natural Diet of Coral- Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)' PLoS One, vol 9, no. 2, pp. e90152.
  • Rabouille, S, van de Waal, DB, Matthijs, HCP & Huisman, J 2014, 'Nitrogen fixation and respiratory electron transport in the cyanobacterium Cyanothece under different light/dark cycles' FEMS Microbiology Ecology, vol 87, no. 3, pp. 630-638.
  • den Haan, J, Visser, PM, Ganase, AE, Gooren, EE, Stal, LJ, van Duyl, FC, Vermeij, MJA & Huisman, J 2014, 'Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef' Coral reefs, vol 33, no. 4, pp. 1003- 1015.
  • Sorokin, DY, Vejmelkova, D, Lücker, S, Streshinskaya, GM, Rijpstra, WIC, Sinninghe Damste, JS, Kleerbezem, R, van Loosdrecht, M, Muyzer, G & Daims, H 2014, 'Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite- oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi' International Journal of Systematic and Evolutionary Microbiology, vol 64, no. 6, pp. 1859-1865.
  • Booij, P, Lamoree, MH, Sjollema, SB, de Voogt, P, Schollée, JE, Vethaak, AD & Leonards, PEG 2014, 'Non-target metabolomic profiling of the marine microalgae dunaliella tertiolecta after exposure to diuron using complementary high- resolution analytical techniques' Current Metabolomics, vol 2, no. 3, pp. 213-222.
  • Bale, NJ, Villanueva, L, Fan, H, Stal, LJ, Hopmans, EC, Schouten, S & Sinninghe Damsté, JS 2014, 'Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea' FEMS Microbiology Ecology, vol 89, no. 1, pp. 99-110.
  • Liu, Q-X, Herman, PMJ, Mooij, WM, Huisman, J, Scheffer, M, Olff, H & van de Koppel, J 2014, 'Pattern formation at multiple spatial scales drives the resilience of mussel bed ecosystems' Nature Communications, vol 5, pp. 5234.
  • Suzuki, S, Kuenen, JG, Schipper, K, van der Velde, S, Ishii, S, Wu, A, Sorokin, DY, Tenney, A, Meng, XY, Morrill, PL, Kamagata, Y, Muyzer, G & Nealson, KH 2014, 'Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site' Nature Communications, vol 5, pp. 3900.
  • Vervoort, MTW, Vonk, JA, Brolsma, KM, Schütze, W, Quist, CW, de Goede, RGM, Hoffland, E, Bakker, J, Mulder, C, Hallmann, J & Helder, J 2014, 'Release of isothiocyanates does not explain the effects of biofumigation with Indian mustard cultivars on nematode assemblages' Soil Biology and Biochemistry, vol 68, pp. 200-207.
  • Sheik, AR, Brussaard, CPD, Lavik, G, Lam, P, Musat, N, Krupke, A, Littmann, S, Strous, M & Kuypers, MMM 2014, ' Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa' The ISME Journal, vol 8, pp. 212-225.
  • Verspagen, JMH, van de Waal, DB, Finke, JF, Visser, PM, van Donk, E & Huisman, J 2014, 'Rising CO2 levels will intensify phytoplankton blooms in eutrophic and hypertrophic lakes' PLoS One, vol 9, no. 8, e104325.
  • Sjollema, SB, Vavourakis, CD, van der Geest, HG, Vethaak, AD & Admiraal, W 2014, 'Seasonal variability in irradiance affects herbicide toxicity to the marine flagellate Dunaliella tertiolecta' Frontiers in Marine Science, vol 1, 13.
  • Lim, YW, Cuevas, DA, Silva, GGZ, Aguinaldo, K, Dinsdale, EA, Haas, AF, Hatay, M, Sanchez, SE, Wegley-Kelly, L, Dutilh, BE, Harkins, TT, Lee, CC, Tom, W, Sandin, SA, Smith, JE, Zgliczynski, B, Vermeij, MJA, Rohwer, F & Edwards, RA   2014, 'Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition' PeerJ, vol 2, e520.
  • Sorokin, DY, Abbas, B, Tourova, TP, Bumazhkin, BK, Kolganova, TV & Muyzer, G 2014, 'Sulfate-dependent acetate oxidation under extremely natron-alkaline conditions by syntrophic associations from hypersaline soda lakes' Microbiology, vol 160, no. 4, pp. 723-732.
  • Bauersachs, T, Stal, LJ, Grego, M & Schwark, L 2014, 'Temperature induced changes in the heterocyst glycolipid composition of N2-fixing heterocystous cyanobacteria' Organic Geochemistry, vol 69, pp. 98-105.
  • Burson, A, Matthijs, HCP, de Bruijne, W, Talens, R, Hoogenboom, R, Gerssen, A, Visser, PM, Stomp, M, Steur, K, van Scheppingen, Y & Huisman, J 2014, 'Termination of a toxic Alexandrium bloom with hydrogen peroxide' Harmful Algae, vol 31, pp. 125-135.
  • Schram, E, Roques, JAC, van Kuijk, T, Abbink, W, van de Heul, J, de Vries, P, Bierman, S, van de Vis, H & Flik, G 2014, ' The impact of elevated water ammonia and nitrate concentrations on physiology, growth and feed intake of pikeperch (Sander lucioperca)' Aquaculture, vol 420-421, pp. 95-104.
  • Ahmed, M, Stal, LJ & Hasnain, S 2014, 'The morphology and bioactivity of the rice field cyanobacterium Leptolyngbya' Revista de biología tropical, vol 62, no. 3, pp. 1251-1260.
  • Schuurmans, RM, Schuurmans, JM, Bekker, M, Kromkamp, JC, Matthijs, HCP & Hellingwerf, KJ 2014, 'The redox potential of the plastoquinone pool of the cyanobacterium Synechocystis species strain PCC 6803 is under strict homeostatic control' Plant Physiology, vol 165, no. 1, pp. 463-475.
  • Whatley, MH, van Loon, EE, Vonk, JA, van der Geest, HG & Admiraal, W 2014, 'The role of emergent vegetation in structuring aquatic insect communities in peatland drainage ditches' Aquatic Ecology, vol 48, pp. 267-283.
  • Visser, F, Miller, PJO, Antunes, RN, Oudejans, MG, MacKenzie, ML, Aoki, K, Lam, FPA, Kvadsheim, PH, Huisman, J & Tyack, P 2014, 'The social context of individual foraging behaviour in long-finned pilot whales (Globicephala melas)' Behaviour, vol 151, no. 10, pp. 1453-1477.
  • Miyatake, T, Moerdijk-Poortvliet, TCW, Stal, LJ & Boschker, HTS 2014, 'Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method' Limnology and Oceanography, vol 59, no. 4, pp. 1275-1287.
  • Goldenberg Vilar, A, van Dam, H, Vonk, JA, van der Geest, HG & Admiraal, W 2014, 'Typology of diatom communities in the Dutch delta: recognizing patterns of environmental drivers in nutrient rich ditches' Ecological Indicators, vol 45, pp. 561-569.

2013

  • Chen, Y, Geurts, M, Sjollema, SB, Kramer, NI, Hermens, JLM & Droge, STJ 2013, 'Acute toxicity of the cationic surfactant C12-benzalkonium in different bioassays: how test design affects bioavailability and effect concentrations' Environmental Toxicology and Chemistry, vol 33, no. 3, pp. 606-615.
  • Tourova, TP, Slobodova, NV, Bumazhkin, BK, Kolganova, TV, Muijzer, G & Sorokin, DY 2013, 'Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes using soxB as a functional molecular marker' FEMS Microbiology Ecology, vol 84, no. 2, pp. 280-289.
  • Brussaard, CPD, Noordeloos, AAM, Witte, H, Collenteur, MCJ, Schulz, K, Ludwig, A & Riebesell, U 2013, 'Arctic microbial community dynamids influenced by elevated CO2 levels' Biogeosciences, vol 10, pp. 719-731.
  • Gregg, AK, Hatay, M, Haas, AF, Robinett, NL, Barott, K, Vermeij, MJA, Marhaver, K, Thompson, F, Meirelles, P & Rohwer, F 2013, 'Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates' PeerJ, vol 1, e107.
  • Aokia, K, Sakai, M, Miller, PJO, Visser, F & Sato, K 2013, 'Body contact and synchronous diving in long-finned pilot whales' Behavioural processes, vol 99, pp. 12-20.
  • Bolhuis, H, Fillinger, L & Stal, LJ 2013, 'Coastal microbial mat diversity along a natural salinity gradient.' PLoS One, vol 8, no. 5, pp. e63166.
  • Filatov, MV, Frade, PR, Bak, RPM, Vermeij, MJA & Kaandorp, JA 2013, 'Comparison between colony morphology and molecular phylogeny in the Caribbean scleractinian coral genus Madracis' PLoS One, vol 8, no. 8, pp. e71287.
  • Vonk, JA & Mulder, C 2013, 'Contrasting influence of soil nutrients and microbial community on differently sized basal consumers' Naturwissenschaften, vol 100, no. 7, pp. 611-620.
  • Oyoo-Okoth, E, Admiraal, W, Osano, O, Manguya-Lusega, D, Ngure, V, Kraak, MHS, Chepkirui-Boit, V & Makwali, J 2013, 'Contribution of soil, water and food consumption to metal exposure of children from geological enriched environments in the coastal zone of Lake Victoria, Kenya.' International journal of hygiene and environmental health, vol 216, no. 1, pp. 8-16.
  • Besaury, L, Marty, F, Buquet, S, Mesnage, V, Muijzer, G & Quillet, L 2013, 'Culture-Dependent and Independent Studies of Microbial Diversity in Highly Copper-Contaminated Chilean Marine Sediments' Microbial Ecology, vol 65, no. 2, pp. 311- 324.
  • Waaijers, SL, Bleyenberg, TE, Dits, A, Schoorl, M, Schütt, J, Kools, SAE, de Voogt, P, Admiraal, W, Parsons, JR & Kraak, MHS 2013, 'Daphnid life cycle response to new generation of flame retardants' Environmental Science and Technology, vol 47, no. 23, pp. 13798-13803.
  • Anderwald, P, Brandecker, A, Coleman, M, Collins, C, Denniston, H, Haberlin, MD, O’Donovan, M, Pinfield, R, Visser, F & Walshe, L 2013, 'Displacement responses of a mysticete, an odontocete, and a phocid seal to construction-related vessel traffic' Endangered Species Research, vol 21, no. 3, pp. 231-240.
  • Benavides, M, Agawin, NSR, Aristegui, J, Peene, J & Stal, LJ 2013, 'Dissolved organic nitrogen and carbon release by a marine unicellular diazotrophic cyanobacterium' Aquatic Microbial Ecology, vol 69, no. 1, pp. 69-80.
  • Chen, BS, Otten, LG, Resch, V, Muyzer, G & Hanefeld, U 2013, 'Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895' Standards in Genomic Sciences, vol 9, no. 1, pp. 175-184.
  • Cavalca, L, Corsini, A, Andreoni, V & Muyzer, G 2013, 'Draft genome sequence of the arsenite-oxidizing strain Aliihoeflea sp. 2WW, isolated from arsenic-contaminated groundwater' Genome Announcements, vol 1, no. 6, pp. e1072-13.
  • Wilhartilz, IC, Krischner, AKT, Brussaard, CPD, Fisher, UR, Wieltschnig, C, Stadler, H & Farnleitner, AH 2013, 'Dynamics of natural prokaryotes, viruses and heterotrophic nanoflagellates in alpine karstic groundwater' MicrobiologyOpen, vol 2, no. 4, pp. 633-643.
  • de León, R, Vane, K, Bertuol, P, Chamberland, VC, Simal, F, Imms, E & Vermeij, MJA 2013, 'Effectiveness of lionfish removal efforts in the Southern Caribbean' Endangered Species Research, vol 22, no. 2, pp. 175-182.
  • Motegi, C, Tanaka, T, Piontek, J, Brussaard, CPD, Gattuso, JP & Weinbauer, MG 2013, 'Effect of CO2 enrichment on bacterial metabolism in an Arctic fjord' Biogeosciences, vol 10, pp. 3285-3296.
  • Hunting, ER, Mulder, C, Kraak, MHS, Breure, AM & Admiraal, W 2013, 'Effects of copper on invertebrate-sediment interactions' Environmental Pollution, vol 180, pp. 131-135.
  • Verschoor, AM, van Dijk, MA, Huisman, J & van Donk, E 2013, 'Elevated CO2 concentrations affect the elemental stoichiometry and species composition of an experimental phytoplankton community' Freshwater Biology, vol 58, no. 3, pp. 597-611.
  • Booij, P, Sjollema, SB, Leonards, PEG, de Voogt, P, Stroomberg, GJ, Vethaak, AD & Lamoree, MH 2013, 'Extraction Tools for Identification of Chemical Contaminants in Estuarine and Coastal Waters to Determine Toxic Pressure on Primary Producers' Chemosphere, vol 93, no. 1, pp. 107-114.
  • den Haan, J, Huisman, J, Dekker, F, ten Brinke, JL, Ford, AK, van Ooijen, J, van Duyl, FC, Vermeij, MJA & Visser, PM 2013, 'Fast detection of nutrient limitation in macroalgae and seagrass with nutrient-induced fluorescence.' PLoS One, vol 8, no. 7, pp. e68834.
  • Verdonschot, PFM & Besse-Lototskaya, AA 2013, 'Flight distance of mosquitoes (Culicidae): A metadata analysis to support the management of barrier zones around rewetted and newly constructed wetlands' limnologica, vol 45, pp. 69-79.
  • Visser, M, Worm, P, Muyzer, G, Pereira, IAC, Schaap, PJ, Plugge, CM, Kuever, J, Parshina, SN, Nazina, TN, Ivanova, AE, Bernier-Latmani, R, Goodwin, LA, Kyrpides, NC, Woyke, T, Chain, P, Davenport, KW, Spring, S, Klenk, H-P & Stams, AJM 2013, 'Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT' Standards in Genomic Sciences, vol 8, no. 1, pp. 69-87.
  • Santini, S, Jeudy, S, Bartoli, J, Poirot, O, Lescot, M, Abergel, C, Berbe, V, Wommack, KE, Noordeloos, AAM, Brussaard, CPD & Claverie, JM 2013, 'Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes' Proceedings of the National Academy of Sciences of the United States of America, vol 110, no. 26, pp. 10800-10805.
  • Hakkila, K, Antal, T, Gunnelius, L, Kurkela, J, Matthijs, HCP, Tyystjärvi, E & Tyystjärvi, T 2013, 'Group 2 Sigma Factor Mutant ΔsigCDE of the Cyanobacterium Synechocystis sp. PCC 6803 Reveals Functionality of Both Carotenoids and Flavodiiron Proteins in Photoprotection of Photosystem II' Plant and Cell Physiology, vol 54, no. 11, pp. 1780-1790.
  • Carreira, C, Larsen, M, Glud, RN, Brussaard, CPD & Middelboe, M 2013, 'Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment' Aquatic Microbial Ecology, vol 69, no. 3, pp. 183-192.
  • Bouwman, AF, Beusen, AHW, Overbeek, CC, Bureau, DP, Pawlowski, M & Glibert, PM 2013, 'Hindcasts and future projections of global inland and coastal nitrogen and phosphorus loads due to finfish aquaculture' Reviews in Fisheries Science, vol 21, no. 2, pp. 112-156.
  • Foster, NL, Baums, IB, Sanchez, JA, Paris, CB, Chollett, I, Agudelo, CL, Vermeij, MJA & Mumby, PJ 2013, 'Hurricane- driven patterns of clonality in an ecosystem engineer: The Caribbean coral Montastraea annularis.' PLoS One, vol 8, no. 1, pp. e53283.
  • Voß, B, Bolhuis, H, Fewer, D, Kopf, M, Möke, F, Haas, F, El-Shehawy, R, Hayes, P, Bergman, B, Sivonen, K, Dittmann, E, Scanlan, DJ, Hagemann, M, Stal, LJ & Hess, WR 2013, 'Insights into the physiology and ecology of the brackish-water- adapted cyanobacterium Nodularia spumigena sp. CCY9414 based on a genome-transcriptome analysis' PLoS One, vol  8, no. 3, pp. e60224.
  • Sorokin, DY, Tourova, TP & Muyzer, G 2013, 'Isolation and characterization of two novel alkalitolerant sulfidogens from a Thiopaq bioreactor, Desulfonatronum alkalitolerans sp. nov., and Sulfurospirillum alkalitolerans sp. nov.' Extremophiles, vol 17, no. 3, pp. 535-543.
  • Marhaver, KL, Vermeij, MJA, Rohwer, F & Sandin, SA 2013, 'Janzen-Connell effects in a broadcast-spawning Caribbean coral: Distance-dependent survival of larvae and settlers.' Ecology, vol 94, no. 1, pp. 146-160.
  • Hartmann, AC, Marhaver, KL, Chamberland, VF, Sandin, SA & Vermeij, MJA 2013, 'Large birth size does not reduce the negative latent effects of harsh environmental conditions across life stages in two coral species.' Ecology, vol 94, no. 9, pp. 1966-1976.
  • Brauer, VS, Stomp, M, Rosso, C, van Beusekom, SAM, Emmerich, B, Stal, LJ & Huisman, J 2013, 'Low temperature delays timing and enhances the cost of nitrogen fixation in the unicellular cyanobacterium Cyanothece' The ISME Journal, vol 7, pp. 2105-2115.
  • Bouwman, L, Beusen, A, Glibert, PM, Overbeek, C, Pawlowski, M, Herrera, J, Mulsow, S, Yu, R & Zhou, M 2013, ' Mariculture: significant and expanding cause of coastal nutrient enrichment' Environmental Research Letters, vol 8, no. 4, pp. 044026.
  • Brandsma, J, Martínez Martínez, J, Slagter, HA, Evans, C & Brussaard, CPD 2013, 'Microbial biogeography of the North Sea during summer' Biogeochemistry, vol 113, no. 1-3, pp. 119-136.
  • Cavalca, L, Corsini, A, Zaccheo, P, Andreoni, V & Muyzer, G 2013, 'Microbial transformations of arsenic: perspectives for biological removal of arsenic from water' Future Microbiology, vol 8, no. 6, pp. 753-768.
  • Wilken, S, Huisman, J, Naus-Wiezer, S & van Donk, E 2013, 'Mixotrophic organisms become more heterotrophic with rising temperature' Ecology Letters, vol 16, no. 2, pp. 225-233.
  • Waaijers, SL, Kong, D, Hendriks, HS, de Wit, CA, Cousins, IT, Westerink, RHS, Leonards, PEG, Kraak, MHS, Admiraal, W, de Voogt, P & Parsons, JR 2013, 'Persistence, bioaccumulation and toxicity of halogen-free flame retardants.' Reviews of Environmental Contamination and Toxicology, vol 222, pp. 1-71.
  • Loayza Muro, RA, Marticorena-Ruíz, JK, Palomino, EJ, Merritt, C, de Baat, ML, van Gemert, M, Verweij, RA, Kraak, MHS & Admiraal, W 2013, 'Persistence of chironomids in metal polluted Andean high altitude streams: does melanin play a role?' Environmental Science and Technology, vol 47, no. 1, pp. 601-607.
  • Liu, Q-X, Doelman, A, Rottschäfer, V, de Jager, M, Herman, PMJ, Rietkerk, M & van der Koppel, J 2013, 'Phase separation explains a new class of selforganized spatial patterns in ecological systems' Proceedings of the National Academy of Sciences of the United States of America, vol 110, no. 29, pp. 11905-11910.
  • Mulling, BTM, van den Boomen, RM, Claassen, THL, van der Geest, HG, Kappelhof, JWNM & Admiraal, W 2013, ' Physical and biological changes of suspended particles in a free surface flow constructed wetland' Ecological Engineering, vol 60, pp. 10-18.
  • van de Poll, WH, Kulk, G, Timmermans, KR, Brussaard, CPD, van der Woerd, HJ, Kehoe, MJ, Mojica, KDA, Visser, RJW, Rozema, PD & Buma, AGJ 2013, 'Phytoplankton chlorophyll a biomass, composition, and productivity along a  temperature and stratification gradient in the northeast Atlantic Ocean' Biogeosciences, vol 10, pp. 4227-4240.
  • Hopkins, FE, Kimmance, SA, Stephens, JA, Bellerby, RGJ, Brussaard, CPD, Czerny, J, Schulz, KG & Archer, SD 2013, ' Response of halocarbons to ocean acidification in the Arctic' Biogeosciences, vol 10, pp. 2331-2345.
  • Hunting, ER, Ubels, SM, Kraak, MHS & van der Geest, HG 2013, 'Root-derived organic matter confines sponge community composition in mangrove ecosystems' Ecological Processes, vol 2013, no. 2, pp. 14.
  • Vissers, EW, Blaga, CI, Bodelier, PLE, Muyzer, G, Schleper, C, Sinninghe Damsté, JS, Tourna, M & Laanbroek, HJ 2013, 'Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake' FEMS Microbiology Ecology, vol 83, no. 2, pp. 515-526.
  • Verdonschot, RCM & Verdonschot, PFM 2013, 'Shading effects of free-floating plants on drainage-ditch invertebrates' Limnology, vol 15, no. 3, pp. 225-235.
  • Bongaerts, P, Frade, PR, Ogier, JJ, Hay, KB, van Bleijswijk, J, Englebert, N, Vermeij, MJA, Bak, RPM, Visser, PM & Hoegh-Guldberg, O 2013, 'Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef.' BMC Evolutionary Biology, vol 13, pp. 205.
  • Hunting, ER, Franken, O, Knopperts, F, Kraak, MHS, Vargas, R, Rölling, WFM & van der Geest, HG 2013, 'Substrate as driver of sponge distributions in mangrove ecosystems' Marine Ecology - Progress Series, vol 486, pp. 133-141.
  • Païssé, S, Ghiglione, J-F, Marty, F, Abbas, B, Gueuné, H, Sanchez Amaya, J, Muyzer, G & Quillet, L 2013, 'Sulfate- reducing bacteria inhabiting natural corrosion depostis from marine steel structures' Applied Microbiology and Biotechnology, vol 97, no. 16, pp. 7493-7504.
  • Belila, A, Abbas, B, Fazaa, I, Saidi, N, Snoussi, M, Hassen, A & Muyzer, G 2013, 'Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon' Applied Microbiology and Biotechnology, vol 97, no. 1, pp. 379-394.
  • Vermeij, MJA, van der Heijden, RA, Olthuis, JG, Marhaver, KL, Smith, JE & Visser, PM 2013, 'Survival and dispersal of turf algae and macroalgae consumed by herbivorous coral reef fishes' Oecologia, vol 171, no. 2, pp. 417-425.
  • de Goeij, JM, van Oevelen, D, Vermeij, MJA, Osinga, R, Middelburg, JJ, de Goeij, AFPM & Admiraal, W 2013, 'Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs' Science, vol 342, no. 6154, pp. 108-110.
  • Mulling, BTM, van den Boomen, RM, van der Geest, HG, Kappelhof, JWNM & Admiraal, W 2013, 'Suspended particle and pathogen peak discharge buffering by a surface-flow constructed wetland' Water Research, vol 47, no. 3, pp. 1091-1100.
  • Vissers, EW, Anselmetti, FS, Bodelier, PLE, Muyzer, G, Schleper, C, Tourna, M & Laanbroek, HJ 2013, 'Temporal and spatial coexistence of archaeal and bacterial amoA genes and gen transcripts in Lake Lucerne' Archaea, vol 2013, pp. 289478.
  • Schulz, KG, Bellerby, RGJ, Brussaard, CPD, Büdenbender, J, Czerny, J, Engel, A, Fischer, M, Koch-Klavsen, S, Krug, SA, Lischka, S, Ludwig, A, Meyerhöfer, M, Nondal, G, Silyakova, A, Stuhr, A & Riebesell, U 2013, 'Temporal biomass dynamics of an Arctic plankton bloom in response to increasing levels of atmospheric carbon dioxide' Biogeosciences, vol 10, pp. 161-180.
  • Fedorenkova, A, Vonk, JA, Breure, AM, Hendriks, AJ & Leuven, RSEW 2013, 'Tolerance of native and non-native fish species to chemical stress: a case study for the River Rhine' Aquatic Invasions, vol 8, no. 2, pp. 231-241.
  • Waaijers, SL, Hartmann, J, Soeter, AM, Helmus, R, Kools, SAE, de Voogt, P, Admiraal, W, Parsons, JR & Kraak, MHS 2013, 'Toxicity of new generation flame retardants to Daphnia magna' Science of the Total Environment, vol 463-464, pp. 1042-1048.
  • Loayza Muro, RA, Marticorena-Ruíz, JK, Palomino, EJ, Merrit, C, Breeuwer, JAJ, Kuperus, P, Kraak, MHS & Admiraal, W 2013, 'Ultraviolet-B-driven pigmentation and genetic diversity of benthic macroinvertebrates from high-altitude Andean streams' Freshwater Biology, vol 58, no. 8, pp. 1710-1719.
  • Hunting, ER, White, CM, van Gemert, M, Mes, D, Stam, E, van der Geest, HG, Kraak, MHS & Admiraal, W 2013, 'UV radiation and organic matter composition shape bacterial functional diversity in sediments' Frontiers in Microbiology, vol 4, pp. 317.
  • Sheik, AR, Brussaard, CPD, Lavik, G, Foster, RA, Musat, N, Adam, B & Kuypers, MMM 2013, 'Viral infection of Phaeocystis globosa impedes release of chitinous star-like structures: quantification using single cell approaches' Environmental Microbiology, vol 15, no. 5, pp. 1441-1451.
  • Lønborg, C, Middelboe, M & Brussaard, CPD 2013, 'Viral lysis of Micromonas pusilla: impacts on dissolved organic matter production and composition' Biogeochemistry, vol 116, no. 1-3, pp. 231-240.

2012

  • Sorokin, DY, Tourova, TP, Panteleeva, AN, Kaparullina, EN & Muyzer, G 2012, 'Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes' Extremophiles, vol 16, no. 2, pp. 307-315.
  • Vejmelkova, D, Sorokin, DY, Abbas, B, Kovaleva, OL, Kleerebezem, R, Kampschreur, MJ, Muyzer, G & van Loosdrecht, MCM 2012, 'Analysis of ammonia-oxidizing bacteria dominating in lab-scale bioreactors with high ammonium bicarbonate loading' Applied Microbiology and Biotechnology, vol 93, no. 1, pp. 401-410.
  • de Graaff, M, Klok, JBM, Bijmans, MFM, Muyzer, G & Janssen, AJH 2012, 'Application of a 2-step process for the biological treatment of sulfidic spent caustics' Water Research, vol 46, no. 3, pp. 723-730.
  • Wegley Kelly, L, Barott, KL, Dinsdale, E, Friedlander, AM, Nosrat, B, Obura, D, Sala, E, Sandin, SA, Smith, JE, Vermeij, MJA, Williams, GJ, Willner, D & Rohwer, F 2012, 'Black reefs: iron-induced phase shifts on coral reefs' The ISME Journal, vol 6, pp. 638-649.
  • Marinković, M, de Leeuw, WC, de Jong, M, Kraak, MHS, Admiraal, W, Breit, TM & Jonker, MJ 2012, 'Combining next- generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius' PLoS One, vol 7, no. 10, pp. e48096.
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  • Blauw, AN, Beninca, E, Laane, RWPM, Greenwood, N & Huisman, J 2012, 'Dancing with the tides: fluctuations of coastal phytoplankton orchestrated by different oscillatory modes of the tidal cycle' PLoS One, vol 7, no. 11, e49319.
  • Kampfraath, AA, Hunting, ER, Mulder, C, Breure, AM, Gessner, MO, Kraak, MHS & Admiraal, W 2012, 'DECOTAB: a multipurpose standard substrate to assess effects of litter quality on microbial decomposition and invertebrate consumption' Freshwater Science, vol 31, no. 4, pp. 1156-1162.
  • Sorokin, DY, Tourova, TP, Panteleeva, AN & Muyzer, G 2012, 'Desulfonatronobacter acidivorans gen. nov., sp. nov., and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes' International Journal of Systematic and Evolutionary Microbiology, vol 62, no. 9, pp. 2107-2113.
  • Sorokin, DY, Tourova, TP, Abbas, B, Suhacheva, MV & Muyzer, G 2012, 'Desulfonatronovibrio halophilus sp. nov., a novel moderately halophilic sulfate-reducing bacterium from hypersaline chloride-sulfate lakes in Central Asia' Extremophiles, vol 16, no. 3, pp. 411-417.
  • Sorokin, DY, Tourova, TP, Sukhacheva, MV & Muyzer, G 2012, 'Desulfuribacillus alkaliarsenatis gen. nov., sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes' Extremophiles, vol 16, no. 4, pp. 597-605.
  • Pfreundt, U, Stal, LJ, Voss, B & Hess, WR 2012, 'Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium' The ISME Journal, vol 6, pp. 1367-1377.
  • Mulder, C, Boit, A, Mori, S, Vonk, JA, Dyer, SD, Faggiano, L, Geisen, S, González, AL, Kaspari, M, Lavorel, S, Marquet, PA, Rossberg, AG, Sterner, RW, Voigt, W & Wall, DH 2012, 'Distributional (in)congruence of biodiversity-ecosystem functioning' Advances in Ecological Research, vol 46, pp. 1-88.
  • Oyoo-Okoth, E, Admiraal, W, Osano, O, Kraak, MHS, Were-Kogogo, PJA, Gichuki, J, Ngure, V, Makwali, J & Ogwai, C 2012, 'Dynamics of metal uptake and depuration in a parasitized cyprinid fish (Rastrineobola argentea)' Aquatic Toxicology, vol 124-125, pp. 34-40.
  • Hernádez Leal, L, Soeter, AM, Kools, SAE, Kraak, MHS, Parsons, JR, Temmink, H, Zeeman, G & Buisman, CJN 2012, ' Ecotoxicological assessment of grey water treatment systems with Daphnia magna and Chironomus riparius' Water Research, vol 46, no. 4, pp. 1038-1044.
  • Severin, I, Confurius-Guns, V & Stal, LJ 2012, 'Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats' Archives of Microbiology, vol 194, no. 6, pp. 483-491.
  • Oyoo-Okoth, E, Admiraal, W, Osano, O & Kraak, MHS 2012, 'Element profiles in hair and nails of children reflect the uptake from food and the environment' Environmental Toxicology and Chemistry, vol 31, no. 7, pp. 1461-1469.
  • Marty, F, Ghiglione, J-F, Païsse, S, Gueuné, H, Quillet, L, van Loosdrecht, MCM & Muyzer, G 2012, 'Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corrored steel' BIOFOULING, vol 28, no. 4, pp. 363-380.
  • Nguyen, LTH, Vandegehuchte, MB, van der Geest, HG & Janssen, CR 2012, 'Evaluation of the mayfly Ephoron virgo for European sediment toxicity assessment' Journal of Soils and Sediments, vol 12, no. 5, pp. 749-757.
  • Stampar, SN, Maronna, MM, Vermeij, MJA, d. Silveira, FL & Morandini, AC 2012, 'Evolutionary diversification of banded tube-dwelling anemones (Cnidaria; Ceriantharia; Isarachnanthus) in the Atlantic Ocean' PLoS One, vol 7, no. 7, e41091.
  • Marinković, M, de Leeuw, WC, Ensink, WA, de Jong, M, Breit, TM, Admiraal, W, Kraak, MHS & Jonker, MJ 2012, 'Gene expression patterns and life cycle responses of toxicant-exposed chironomids' Environmental Science and Technology, vol 46, no. 22, pp. 12679-12686.
  • Di Veroli, A, Goretti, E, León Paumen, M, Kraak, MHS & Admiraal, W 2012, 'Induction of mouthpart deformities in chironomid larvae exposed to contaminated sediments.' Environmental Pollution, vol 166, pp. 212-217.
  • Hunting, ER, Whatley, MH, van der Geest, HG, Mulder, C, Kraak, MHS, Breure, AM & Admiraal, W 2012, 'Invertebrate footprints on detritus processing, bacterial community structure, and spatiotemporal redox profiles' Freshwater Science, vol 31, no. 3, pp. 724-732.
  • Ismail-Ben Ali, A, El Bour, M, Ktari, L, Bolhuis, H, Ahmed, A, Boudabbous, A & Stal, LJ 2012, 'Jania rubens-associated bacteria: molecular identification and antimicrobial activity' Journal of applied phycology, vol 24, no. 3, pp. 525-534.
  • Barott, KL, Rodriguez-Mueller, B, Youle, M, Marhaver, KL, Vermeij, MJA, Smith, JE & Rohwer, FL 2012, 'Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae' Proc. R. Soc. B, vol 279, no. 1733, pp. 1655-1664.
  • Barott, KL, Williams, GJ, Vermeij, MJA, Harris, J, Smith, JE, Rohwer, FL & Sandin, SA 2012, 'Natural history of coral-algae competition across a gradient of human activity in the Line Islands' Marine Ecology - Progress Series, vol 460, pp. 1-12. 
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  • Durham, B, van de Noort, R, Martens, VV & Vorenhout, M 2012, 'Organic loss in drained wetland: managing the carbon footprint' Conservation and Management of Archaeological Sites, vol 14, no. 1-4, pp. 85-98.
  • Oyoo-Okoth, E, Admiraal, W, Osano, O, Kraak, MHS, Gichuki, J & Ogwai, C 2012, 'Parasites modify sub-cellular partitioning of metals in the gut of fish' Aquatic Toxicology, vol 106-107, pp. 76-84.
  • Kehoe, MJ, O’ Brien, K, Grinham, A, Rissik, D, Ahern, KS & Maxwell, P 2012, 'Random forest algorithm yields accurate quantitative prediction models of benthic light at intertidal sites affected by toxic Lyngbya majuscula blooms' Harmful Algae vol 19, pp. 46-52.
  • Marinković, M, de Bruijn, K, Asselman, M, Bogaert, M, Jonker, MJ, Kraak, MHS & Admiraal, W 2012, 'Response of the nonbiting midge Chironomus riparius to multigeneration toxicant exposure' Environmental Science and Technology, vol 46, no. 21, pp. 12105-12111.
  • Matthijs, HCP, Visser, PM, Reeze, B, Meeuse, J, Slot, PC, Wijn, G, Talens, R & Huisman, J 2012, 'Selective suppression of harmful cyanobacteria in an entire lake with hydrogen peroxide' Water Research, vol 46, no. 5, pp. 1460-1472.
  • Wang, J, Krause, S, Muyzer, G, Meima-Franke, M, Laanbroek, HJ & Bodelier, PLE 2012, 'Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland' Frontiers in Microbiology, vol 3, 64, pp. 64.
  • Sorokin, DY, Zacharova, EE, Pimenov, NV, Tourova, TP, Panteleeva, AN & Muyzer, G 2012, 'Sulfidogenesis in hypersaline chloride-sulfate lakes of Kulunda Steppe (Altai, Russia)' FEMS Microbiology Ecology, vol 79, no. 2, pp. 445- 453.
  • Pade, N, Compaoré, J, Klähn, S, Stal, LJ & Hagemann, M 2012, 'The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein' Environmental Microbiology, vol 14, no. 5, pp. 1261-1271.
  • Brauer, VS, Stomp, M & Huisman, J 2012, 'The nutrient-load hypothesis: patterns of resource limitation and community structure driven by competition for nutrients and light' American Naturalist, vol 179, no. 6, pp. 721-740.
  • Sorokin, DY, Muntyan, MS, Panteleeva, AN & Muyzer, G 2012, 'Thioalkalivibrio sulfidophilus sp. nov., a haloalkaliphilic sulfur-oxidizing gammaproteobacterium from alklaine habitats' International Journal of Systematic and Evolutionary Microbiology, vol 62, no. 8, pp. 1884-1889.
  • Krasikov, V, Aguirre von Wobeser, E, Dekker, HL, Huisman, J & Matthijs, HCP 2012, 'Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803.' Physiologia Plantarum, vol 145, no. 3, pp. 426-439.

Published by  IBED

21 June 2017