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Institute for Biodiversity and Ecosystem Dynamics null

Prof. dr. F. (Ferry) Hagen

Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
  • Science Park 904
Postal address
  • Postbus 94240
    1090 GE Amsterdam
Contact details
Social media
  • Profile

    Ferry Hagen is group leader of the department Medical Mycology at the Westerdijk Fungal Biodiversity Institute (WI-KNAW), Utrecht, The Netherlands. He obtained his Bachelor’s degree in Molecular Biology at the HU University of Applied Sciences Utrecht in 2005, and a year later he started with his PhD project at the CBS-KNAW Fungal Biodiversity Center in Utrecht, The Netherlands. The focus of this research project was the molecular epidemiology of the Cryptococcus gattii species complex, with an emphasis on the outbreaks in temperate climate zones.

    In 2011 he received his PhD degree from the Utrecht University, Utrecht, The Netherlands, and directly thereafter he started with a traineeship at the Canisius Wilhelmina Hospital to become medical molecular microbiologist. The molecular epidemiology, molecular diagnostics of fungal pathogens, and emerging antifungal resistance are his main interests. He is co-founder of the Young ISHAM, treasurer of the Netherlands Society for Medical Mycology, chair of the Division Microbial Genomics of the Royal Netherlands Society for Microbiology, and member of the Editorial Board of Mycopathologia, Medical Mycology, Clinical Microbiology Reviews, and Revista Iberoamericana de Micología.

  • Publications

    2023

    • Daneshnia, F., Arastehfar, A., Lombardi, L., Binder, U., Scheler, J., Vahedi Shahandashti, R., Hagen, F., Lass-Flörl, C., Mansour, M. K., Butler, G., & Perlin, D. S. (2023). Candida parapsilosis isolates carrying mutations outside FKS1 hotspot regions confer high echinocandin tolerance and facilitate the development of echinocandin resistance. International Journal of Antimicrobial Agents, 62(1), Article 106831. https://doi.org/10.1016/j.ijantimicag.2023.106831
    • De Jong, A. W., Al-Obaid, K., Mohd Tap, R., van den Ende, B. G., Groenewald, M., Joseph, L., Ahmad, S., & Hagen, F. (2023). Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex. Medical Mycology, 61(2), Article myad009. https://doi.org/10.1093/mmy/myad009
    • Gerrits van den Ende, B., Rodrigues, A. M., Hahn, R. C., & Hagen, F. (2023). A surprising finding: The curious case of a tongue lesion misdiagnosed as paracoccidioidomycosis. Revista Iberoamericana de Micologia, 40(1), 10-14. https://doi.org/10.1016/j.riam.2022.11.002
    • Kidd, S. E., Abdolrasouli, A., & Hagen, F. (2023). Fungal Nomenclature: Managing Change is the Name of the Game. Open Forum Infectious Diseases, 10(1), ofac559. https://doi.org/10.1093/ofid/ofac559
    • Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M. E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., D’enfert, C., Engelthaler, D. M., Eyre, D. W., ... Cuomo, C. A. (2023). Comparing genomic variant identification protocols for Candida auris. Microbial Genomics, 9(4), Article 000979. https://doi.org/10.1099/mgen.0.000979
    • Losada, L. C. D. M. L., Monteiro, R. C., de Carvalho, J. A., Hagen, F., Fisher, M. C., Spruijtenburg, B., Meis, J. F., de Groot, T., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., de Camargo, Z. P., & Rodrigues, A. M. (2023). High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging Sporothrix Species. Journal of Fungi, 9(3), Article 354. https://doi.org/10.3390/jof9030354
    • Nourrisson, C., Moniot, M., Lavergne, R-A., Robert, E., Bonnin, V., Hagen, F., Grenouillet, F., Cafarchia, C., Butler, G., Cassaing, S., Sabou, M., Le Pape, P., Poirier, P., & Morio, F. (2023). Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples. Clinical Microbiology and Infection, 29(2), Article 257. Advance online publication. https://doi.org/10.1016/j.cmi.2022.09.021
    • Pinheiro, B. G., Pôssa, A. P., Ricci, G., Nishikaku, A. S., Hagen, F., Hahn, R. C., de Camargo, Z. P., & Rodrigues, A. M. (2023). Development of a Multiplex qPCR Assay for Fast Detection and Differentiation of Paracoccidioidomycosis Agents. Journal of Fungi, 9(3), Article 358. https://doi.org/10.3390/jof9030358
    • Wilmes, D., Hagen, F., Verissimo, C., Alanio, A., Rickerts, V., & Buitrago, M. J. (2023). A multicentre external quality assessment: A first step to standardise PCR protocols for the diagnosis of histoplasmosis and coccidioidomycosis. Mycoses, 66(9), 774-786. https://doi.org/10.1111/myc.13603

    2022

    • Francisco, E. C., & Hagen, F. (2022). JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients. Journal of Medical Microbiology, 71(12). https://doi.org/10.1099/jmm.0.001621
    • Guevara, A., Nery, A. F., de Souza Carvalho Melhem, M., Bonfietti, L., Rodrigues, A. M., Hagen, F., de Carvalho, J. A., de Camargo, Z. P., Jacomel F de Souza Lima, B., Vicente, V. A., & Hahn, R. C. (2022). Molecular epidemiology and clinical-laboratory aspects of chromoblastomycosis in Mato Grosso, Brazil. Mycoses, 65(12), 1146-1158. https://doi.org/10.1111/myc.13505
    • Guevara, A., Vicente, V. A., de Souza Lima, B. J. F., Nery, A. F., Hagen, F., & Hahn, R. C. (2022). Chromoblastomycosis-Leprosy Co-Infection in Central West Brazil. Presentation of Three Cases and Literature Review. Mycopathologia, 187(4), 363-374. https://doi.org/10.1007/s11046-022-00646-5
    • Hahn, R. C., Hagen, F., Mendes, R. P., Burger, E., Nery, A. F., Siqueira, N. P., Guevara, A., Rodrigues, A. M., & de Camargo, Z. P. (2022). Paracoccidioidomycosis: Current Status and Future Trends. Clinical microbiology reviews, 35(4), Article e0023321. Advance online publication. https://doi.org/10.1128/cmr.00233-21
    • Hare, R. K., Arastehfar, A., Rosendahl, S., Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F., & Arendrup, M. C. (2022). Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis. Journal of Fungi, 8(2). https://doi.org/10.3390/jof8020183
    • Initiative, F. PCR., White, P. L., Alanio, A., Brown, L., Cruciani, M., Hagen, F., Gorton, R., Lackner, M., Millon, L., Morton, C. O., Rautemaa-Richardson, R., Barnes, R. A., Donnelly, J. P., & Loffler, J. (2022). An overview of using fungal DNA for the diagnosis of invasive mycoses. Expert Review of Molecular Diagnostics, 22(2), 169-184. https://doi.org/10.1080/14737159.2022.2037423
    • Rodrigues, A. M., Hagen, F., & de Camargo, Z. P. (2022). A Spotlight on Sporothrix and Sporotrichosis. Mycopathologia, 187(4), 407-411. https://doi.org/10.1007/s11046-022-00642-9
    • de Carvalho, J. A., Monteiro, R. C., Hagen, F., Camargo, Z. P. D., & Rodrigues, A. M. (2022). Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species. Journal of Fungi, 8(8), Article 809. https://doi.org/10.3390/jof8080809
    • de Jong, A. W., Gerrits van den Ende, B., & Hagen, F. (2022). Molecular Tools for Candida auris Identification and Typing. Methods in Molecular Biology, 2517, 33-41. https://doi.org/10.1007/978-1-0716-2417-3_3
    • de Jong, A. W., van Veldhuizen, D., Groot, A. T., & Hagen, F. (2022). Standardized methods to rear high-quality Galleria mellonella larvae for the study of fungal pathogens. Entomologia Experimentalis et Applicata, 170(12), 1073-1080. https://doi.org/10.1111/eea.13237 [details]
    • van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H. V., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J., & van den Wijngaard, R. M. (2022). Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome. Scientific Reports, 12, Article 5391. https://doi.org/10.1038/s41598-022-09436-x

    2021

    • Arastehfar, A., Daneshnia, F., Hilmioglu-Polat, S., Ilkit, M., Yasar, M., Polat, F., Metin, D. Y., Dokumcu, Ü. Z., Pan, W., Hagen, F., Boekhout, T., Perlin, D. S., & Lass-Flörl, C. (2021). Genetically related micafungin-resistant Candida parapsilosis blood isolates harbouring novel mutation R658G in hotspot 1 of Fks1p: a new challenge? Journal of Antimicrobial Chemotherapy, 76(2), 418–422. https://doi.org/10.1093/jac/dkaa419 [details]
    • Castelo-Branco, D., Lockhart, S. R., Chen, Y-C., Santos, D. A., Hagen, F., Jane Hawkins, N., Lavergne, R-A., Meis, J., Le Pape, P., Fabio Gadelha Rocha, M., Julio Costa Sidrim, J., Arendrup, M., & Morio, F. (2021). Collateral consequences of agricultural fungicides on pathogenic yeasts: a One Health perspective to tackle azole resistance. Mycoses. https://doi.org/10.1111/myc.13404
    • Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98(1), Article 100116. https://doi.org/10.1016/j.simyco.2021.100116 [details]
    • Della Terra, P. P., Gonsales, F. F., de Carvalho, J. A., Hagen, F., Kano, R., Bonifaz, A., Camargo, Z. P. D., & Rodrigues, A. M. (2021). Development and evaluation of a multiplex qPCR assay for rapid diagnostics of emerging sporotrichosis. Transboundary and emerging diseases. https://doi.org/10.1111/tbed.14350
    • Hagen, F., Chidebelu, P., Nweze, E., Meis, J., & Cogliati, M. (2021). Multi-locus sequence typing reveals genotypic similarity in Nigerian Cryptococcus neoformans AFLP1/VNI of environmental and clinical origin. Journal of Medical Microbiology, 70(10). https://doi.org/10.1099/jmm.0.001440
    • Roberto, T. N., de Carvalho, J. A., Beale, M. A., Hagen, F., Fisher, M. C., Hahn, R. C., de Camargo, Z. P., & Rodrigues, A. M. (2021). Exploring genetic diversity, population structure, and phylogeography in Paracoccidioides species using AFLP markers. Studies in Mycology, 100. https://doi.org/10.1016/j.simyco.2021.100131
    • Shi, D., Haas, P-J., Boekhout, T., Hahn, R. C., & Hagen, F. (2021). Neglecting Genetic Diversity Hinders Timely Diagnosis of Cryptococcus Infections. Journal of Clinical Microbiology, 59(4), Article e02837-20. https://doi.org/10.1128/JCM.02837-20 [details]
    • Silva, C., Juan-Sallés, C., Mendes, J., Mendes, A., Ruivo, M., Abad, J. L., Hagen, F., & Colom, M. F. (2021). Cryptococcus bacillisporus causing cryptococcoma of the beak of an African grey parrot (Psittacus erithacus), Portugal. Medical Mycology Case Reports, 34, 8-12. https://doi.org/10.1016/j.mmcr.2021.08.006
    • Siqueira, N. P., Favalessa, O. C., Maruyama, F. H., Dutra, V., Nakazato, L., Hagen, F., & Hahn, R. C. (2021). Domestic Birds as Source of Cryptococcus deuterogattii (AFLP6/VGII): Potential Risk for Cryptococcosis. Mycopathologia. https://doi.org/10.1007/s11046-021-00601-w
    • Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., ... Boekhout, T. (2021). Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA Fungus, 12, Article 18. https://doi.org/10.1186/s43008-021-00067-x [details]
    • de Jong, A. W., Francisco, E. C., de Almeida, J. N., Brandão, I. B., Pereira, F. M., Dias, P. H. P., de Miranda Costa, M. M., de Souza Jordão, R. T., Vu, D., Colombo, A. L., & Hagen, F. (2021). Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil. Mycopathologia. https://doi.org/10.1007/s11046-021-00593-7

    2020

    2019

    • Arastehfar, A., Bakhtiari, M., Daneshnia, F., Fang, W., Sadati, S. K., Al-Hatmi, A. M. S., Groenewald, M., Sharifi-Mehr, H., Liao, W., Pan, W., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). First fungemia case due to environmental yeast Wickerhamomyces myanmarensis: detection by multiplex qPCR and antifungal susceptibility. Future Microbiology, 14(4), 267-274. https://doi.org/10.2217/fmb-2018-0253 [details]
    • Arastehfar, A., Boekhout, T., Butler, G., Buda De Cesare, G., Dolk, E., Gabaldón, T., Hafez, A., Hube, B., Hagen, F., Hovhannisyan, H., Iracane, E., Kostrzewa, M., Lackner, M., Lass-Flörl, C., Llorens, C., Mixão, V., Munro, C., Oliveira-Pacheco, J., Pekmezovic, M., ... Vatanshenassan, M. (2019). Recent trends in molecular diagnostics of yeast infections: From PCR to NGS. FEMS Microbiology Reviews, 43(5), 517-547. https://doi.org/10.1093/femsre/fuz015
    • Arastehfar, A., Daneshnia, F., Farahyar, S., Fang, W., Salimi, M., Salehi, M., Hagen, F., Weihua, P., Roudbary, M., & Boekhout, T. (2019). Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies. Journal of Oral Microbiology, 11(1), Article 1601061. https://doi.org/10.1080/20002297.2019.1601061 [details]
    • Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, Article 21. https://doi.org/10.3389/fcimb.2019.00021 [details]
    • Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, Article 176. https://doi.org/10.3389/fcimb.2019.00176
    • Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(11), 1695. https://doi.org/10.1099/jmm.0.001075
    • Arastehfar, A., Daneshnia, F., Salehi, M. R., Zarrinfar, H., Khodavaisy, S., Haas, P.-J., Roudbary, M., Najafzadeh, M.-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular characterization and antifungal susceptibilitytesting of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(5), 770-777. https://doi.org/10.1099/jmm.0.000963 [details]
    • Arastehfar, A., Daneshnia, F., Zomorodian, K., Najafzadeh, M. J., Khodavaisy, S., Zarrinfar, H., Hagen, F., Zare Shahrabadi, Z., Lackner, M., Mirhendi, H., Salehi, M., Roudbary, M., Pan, W., Kostrzewa, M., & Boekhout, T. (2019). Low level of antifungal resistance in Iranian isolates of Candida glabrata recovered from blood samples in a multicenter study from 2015 to 2018 and potential prognostic values of genotyping and sequencing of PDR1. Antimicrobial Agents and Chemotherapy, 63(7), Article e02503-18. https://doi.org/10.1128/AAC.02503-18 [details]
    • Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaisy, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K., & Boekhout, T. (2019). Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(8), Article e12. https://doi.org/10.1093/mmy/myz025
    • Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaiysi, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K., & Boekhout, T. (2019). Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(7), 833–840. https://doi.org/10.1093/mmy/myy148 [details]
    • Arastehfar, A., Fang, W., Daneshnia, F., Al-Hatmi, A. M. S., Liao, W., Pan, W., Khan, Z., Ahmad, S., Rosam, K., Lackner, M., Lass-Flörl, C., Hagen, F., & Boekhout, T. (2019). Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiology, 14(1), 33-45. https://doi.org/10.2217/fmb-2018-0227 [details]
    • Arastehfar, A., Fang, W., Pan, W., Lackner, M., Liao, W., Badiee, P., Zomorodian, K., Badali, H., Hagen, F., Lass-Flörl, C., & Boekhout, T. (2019). YEAST PANEL multiplex PCR for identification of clinically important yeast species. Diagnostic Microbiology and Infectious Disease, 93(2), 112-119. https://doi.org/10.1016/j.diagmicrobio.2018.09.007 [details]
    • Arastehfar, A., Khodavaisy, S., Daneshnia, F., Najafzadeh, M.-J., Mahmoudi, S., Charsizadeh, A., Salehi, M.-R., Zarrinfar, H., Raeisabadi, A., Dolatabadi, S., Zare Shahrabadi, Z., Zomorodian, K., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular Identification, Genotypic Diversity, Antifungal Susceptibility, and Clinical Outcomes of Infections Caused by Clinically Underrated Yeasts, Candida orthopsilosis, and Candida metapsilosis: An Iranian Multicenter Study (2014–2019). Frontiers in Cellular and Infection Microbiology, 9, Article 264. https://doi.org/10.3389/fcimb.2019.00264 [details]
    • Cogliati, M., Desnos-Ollivier, M., McCormick-Smith, I., Rickerts, V., Ferreira-Paim, K., Meyer, W., Boekhout, T., Hagen, F., Theelen, B., Inácio, J., Alonso, B., Colom, M. F., Trilles, L., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., ... Lockhart, S. R. (2019). Genotypes and population genetics of cryptococcus neoformans and cryptococcus gattii species complexes in Europe and the mediterranean area. Fungal Genetics and Biology, 129, 16-29. https://doi.org/10.1016/j.fgb.2019.04.001 [details]
    • Gao, Y., Zhan, P., Hagen, F., Menken, S. B. J., Sun, J., Rezaei-Matehkolaei, A., & de Hoog, S. (2019). Molecular epidemiology and in vitro antifungal susceptibility of Trichophyton schoenleinii, agent of tinea capitis favosa. Mycoses, 62(5), 466-474. https://doi.org/10.1111/myc.12889
    • Hong, N., Chen, M., Xu, N., Al-Hatmi, A. M. S., Zhang, C., Pan, W. H., Hagen, F., Boekhout, T., Xu, J., Zou, X. B., & Liao, W. Q. (2019). Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans isolates from paediatric patients in China. Mycoses, 62(2), 171-180. Advance online publication. https://doi.org/10.1111/myc.12863 [details]
    • Kortsinoglou, A. M., Korovesi, A. G., Theelen, B., Hagen, F., Boekhout, T., & Kouvelis, V. N. (2019). The mitochondrial intergenic regions nad1-cob and cob-rps3 as molecular identification tools for pathogenic members of the genus Cryptococcus. FEMS Yeast Research, 19(8), Article foz077. https://doi.org/10.1093/femsyr/foz077 [details]

    2018

    2017

    • Cogliati, M., Puccianti, E., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., Nardoni, S., Macci, C., Trovato, L., Dipineto, L., Rickerts, V., Akcaglar, S., Mlinaric-Missoni, E., Bertout, S., Venca, A. C. F., Sampaio, A. C., Criseo, G., ... Colom, M. F. (2017). Fundamental niche prediction of the pathogenicyeasts Cryptococcus neoformans and Cryptococcus gattii in Europe. Environmental Microbiology, 19(10), 4318-4325. https://doi.org/10.1111/1462-2920.13915 [details]
    • Fang, W., Zhang, L., Liu, J., Denning, D. W., Hagen, F., Jiang, W-W., Hong, N., Deng, S., Lei, X., Deng, D., Liao, W., Xu, J., Boekhout, T., Chen, M., & Pan, W. (2017). Tuberculosis/cryptococcosis co-infection in China between 1965 and 2016. Emerging Microbes & Infections, 6, Article e73. https://doi.org/10.1038/emi.2017.61 [details]
    • Hagen, F., Lumbsch, H. T., Arsenijevic, V. A., Badali, H., Bertout, S., Billmyre, R. B., Bragulat, M. R., Cabañes, F. J., Carbia, M., Chakrabarti, A., Chaturvedi, S., Chaturvedi, V., Chen, M., Chowdhary, A., Colom, M. F., Cornely, O. A., Crous, P. W., Cuétara, M. S., Diaz, M. R., ... Boekhout, T. (2017). Importance of resolving fungal nomenclature: The case of multiple pathogenic species in the Cryptococcus genus. mSphere, 2(4), Article e00238-17. https://doi.org/10.1128/mSphere.00238-17
    • Khayhan, K., Hagen, F., Norkaew, T., Puengchan, T., Boekhout, T., & Sriburee, P. (2017). Isolation of Cryptococcus gattii from a Castanopsis argyrophylla tree hollow (Mai-Kaw), Chiang Mai, Thailand. Mycopathologia, 182(3-4), 365-370. https://doi.org/10.1007/s11046-016-0067-7 [details]
    • Li, Y., Fang, W., Jiang, W., Hagen, F., Liu, J., Zhang, L., Hong, N., Zhu, Y., Xu, X., Lei, X., Deng, D., Xu, J., Liao, W., Boekhout, T., Chen, M., & Pan, W. (2017). Cryptococcosis in patients with diabetes mellitus II in mainland China: 1993‐2015. Mycoses, 60(11), 706-713. https://doi.org/10.1111/myc.12645 [details]
    • Vreulink, J-M., Khayhan, K., Hagen, F., Botes, A., Moller, L., Boekhout, T., Vismer, H., & Botha, A. (2017). Presence of pathogenic cryptococci on trees situated in two recreational areas in South Africa. Fungal Ecology, 30, 101-111. https://doi.org/10.1016/j.funeco.2017.09.005

    2014

    • Lackner, M., de Hoog, G. S., Ferreira Moreno, L., Ahmed, S. A., Hagen, F., & ECMM/ISHAM working group on Scedosporium infections (2014). Proposed nomenclature for Pseudallescheria, Scedosporium and related genera. Fungal Diversity, 67(1), 1-10. https://doi.org/10.1007/s13225-014-0295-4 [details]

    2013

    • Lu, X. L., Najafzadeh, M. J., Dolatabadi, S., Ran, Y. P., Gerrits van den Ende, A. H. G., Shen, Y. N., Li, C. Y., Xi, L. Y., Hao, F., Zhang, Q. Q., Li, R. Y., Hu, Z. M., Lu, G., Wang, J. J., Drogari-Apiranthitou, M., Klaassen, C., Meis, J. F., Hagen, F., Liu, W. D., & de Hoog, G. S. (2013). Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 30, 48-56. https://doi.org/10.3767/003158513X665539 [details]

    2012

    • Chowdhary, A., Kathuria, S., Xu, J., Sharma, C., Sundar, G., Singh, P. K., Gaur, S. N., Hagen, F., Klaassen, C. H., & Meis, J. F. (2012). Clonal expansion and emergence of environmental multiple-triazole-resistant Aspergillus fumigatus strains carrying the TR₃₄/L98H mutations in the cyp51A gene in India. PLoS ONE, 7(12), e52871. https://doi.org/10.1371/journal.pone.0052871

    2022

    • ECMM/ISHAM working group on Scedosporium infections, Lackner, M., de Hoog, G. S., Yang, L., Ferreira Moreno, L., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Flörl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J. P., Cano-Lira, J. F., Guarro, J., ... Pellon, A. (2022). Correction to: Proposed nomenclature for Pseudallescheria, Scedosporium and related genera (Fungal Diversity, (2014), 67, 1, (1-10), 10.1007/s13225-014-0295-4). Fungal Diversity, 113(1), 193-194. https://doi.org/10.1007/s13225-022-00505-0
    • Wilmes, D., Hagen, F., Verissiimo, C., Alanio, A., Rickerts, V., & Buitrago, M. J. (2022). Comparison of PCR protocols for detecting Histoplasma capsulatum and Coccidioides spp. DNA through a multicenter study. Medical Mycology, 60(Supplement 1), 269. Article P458. https://doi.org/10.1093/mmy/myac072.P458

    2023

    2022

    2020

    • Khayhan, K. (2020). The Cryptococcus neoformans/Cryptococcus gattii species complex in Asia. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
  • Ancillary activities
    • Netherlands Society for Medical Mycology
      Board Member
    • SpringerNature
      Associate Editor voor het tijdschrift Mycopathologia
    • Westerdijk Fungal Biodiversity Institute
      Group Leader
    • Journal of Medical Microbiology
      Editor
    • KNVM - Division Microbial Genomics
      Board member
    • Medical Mycology
      Editor
    • Mycoses
      Deputy Editor
    • Netherlands Center for One Health (NCOH)
      Executive Board member
    • Revista Iberoamericana de Micologia
      Editor
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