Dr. ir. E.E. (Emiel) van Loon
Associate Professor Statistical Ecology
Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
- Science Park 904
- Room number:C4.168
Postal address
- Postbus 94240
1090 GE Amsterdam
Contact details
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General info
theoretical and computational ecology webpage
I work as Associate Professor on statistical ecology, dividing my time between teaching applied statistics to ecology and earth science students and research into the analyis of the movement and distribution of organisms in their natural environment.
In my research I currently focus on developing and applying statistical and measurement theory for the analysis of animal movement and distribution through three three projects:
- developing techniques to learn about animal memory and navigation on the basis of gps-tracking data,
- space-time modeling of the Dutch muskrat population, and
- the standardisation of species-distribution modeling workflows.
Furthermore, I have a continuing interest in enhance reproducibility in the natural sciences though standardization and calibration of observation techniques as well as better storage, documentation and curation of observations and computer code.
get model code get paperSoaring bird migration
A while ago we created an agent-based model in Matlab, which can be used to investigate soaring bird migration. The model design and an example of it's application is described in: E.E. van Loon, J. Shamoun-Baranes, W. Bouten & S.L. Davis (2011). Understanding soaring bird migration through interactions and decisions at the individual level. Journal of Theoretical Biology, 270 (1), 112-126.
get model code get papervegetation reconstruction
Boris Jansen and I developed a model to reconstruct past vegetation on the basis of biomarker data. The model is conceptually fairly simple, but performed well in the studies where it was applied so far. The model is coded in Matlab, and described in:
B. Jansen, E.E. van Loon, H. Hooghiemstra & J.M. Verstraten (2010). Improved reconstruction of palaeo-environments through unravelling of preserved vegetation biomarker patterns. Palaeogeography, Palaeoclimatology, Palaeoecology, 285 (1-2), 119-130.get codeMapcurves implementation
Mapcurves is a goodness-of-fit measure to compare two categorical maps by Hargrove et al. 2006. Niels Raes and I have applied it in a study to floristic regions in Borneo. For this study we coded the Mapcurves algorithm in Matlab and R.
Our Mapcurves implementation contains a Matlab function (which includes a demo option), an R function and a separate (R) demo script. The Matlab and R functions do exactly the same, but differ slightly with respect to the way in which the output is formatted. For background info about Mapcurves, see William W. Hargrove, Forrest M. Hoffman and Paul F. Hessburg (2006) Mapcurves: a quantitativemethod for comparing categorical maps. J Geograph Syst, 8, 187-208. DOI 10.1007/s10109-006-0025-x.get paper website Michael Kemp RNCEP at CRAN info NCEP/NCAR reanalysis dataRNCEP
Michael Kemp, a former PhD student in our CGE-group, has created a fantastic R package to process NCEP/NCAR reanalysis (weather) data for use in our bird migration models.
We did describe the package in: Kemp M.U., E.E. van Loon, J. Shamoun-Baranes, W. Bouten (2011) RNCEP: global weather and climate data at your fingertips. Methods in Ecology and Evolution. doi: 10.1111/j.2041-210X.2011.00138.x
For anyone using weather data in ecological models, the RNCEP package may contain very useful functions.Overview of coursesTeaching
I lecture in the BSc and MSc programs of the earth and biological sciences, beta-gamma and future planet studies (see the link below for an overview). These courses cover statistics and research methods in the natural sciences. In addition, I supervise MSc students during their thesis work. If you are interested in statistical or methodological issues, especially when these relate to biogeography or spatio-temporal dynamics, you may consider to conduct an MSc thesis under my supervision.
the IBED-websiteLinks:
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Publications
- refereed (96)
- academic (1)
- professional (4)
- popular scientific (2)
- conference contributions (2)
- recognitions (1)
- datasets (1)
2021
- Ayllón, D., Railsback, S. F., Gallagher, C., Augusiak, J., Baveco, H., Berger, U., Charles, S., Martin, R., Focks, A., Galic, N., Liu, C., van Loon, E. E., Nabe-Nielsen, J., Piou, C., Polhill, J. G., Preuss, T. G., Radchuk, V., Schmolke, A., Stadnicka-Michalak, J., ... Grimm, V. (2021). Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support. Environmental Modelling and Software, 136, [104932]. https://doi.org/10.1016/j.envsoft.2020.104932 [details]
- Brown, J. M., van Loon, E. E., Bouten, W., Camphuysen, K. C. J., Lens, L., Müller, W., Thaxter, C. B., & Shamoun-Baranes, J. (2021). Long-distance migrants vary migratory behaviour as much as short-distance migrants: An individual-level comparison from a seabird species with diverse migration strategies. Journal of Animal Ecology, 90(5), 1058-1070. https://doi.org/10.1111/1365-2656.13431
Corradini, A., Randles, M., Pedrotti, L., van Loon, E., Passoni, G., Oberosler, V., Rovero, F., Tattoni, C., Ciolli, M., & Cagnacci, F. (2021). Effects of cumulated outdoor activity on wildlife habitat use. Biological Conservation, 253, [108818]. https://doi.org/10.1016/j.biocon.2020.108818 [details]- Mekkes, L., Sepúlveda-Rodríguez, G., Bielkinaitė, G., Wall-Palmer, D., Brummer, G-JA., Dämmer, L. K., Huisman, J., van Loon, E., Renema, W., & Peijnenburg, K. T. C. A. (2021). Effects of Ocean Acidification on Calcification of the Sub-Antarctic Pteropod Limacina retroversa. Frontiers in Marine Science, 8, [581432]. https://doi.org/10.3389/fmars.2021.581432 [details]
- Wessel, W. W., Boxman, A. W., Cerli, C., van Loon, E. E., & Tietema, A. (2021). Long-term stabilization of 15N-labeled experimental NH4+ deposition in a temperate forest under high N deposition. Science of the Total Environment, 768, [144356]. https://doi.org/10.1016/j.scitotenv.2020.144356 [details]
2020
- Abcouwer, K., & van Loon, E. (2020). Library inventory using a RFID wand: contribution of tag and book specific factors on the read rate. Library Hi Tech. https://doi.org/10.1108/LHT-06-2019-0129
- Bakx, T. R. M., Lindström, Å., Ram, D., Pettersson, L. B., Smith, H. G., van Loon, E. E., & Caplat, P. (2020). Farmland birds occupying forest clear-cuts respond to both local and landscape features. Forest Ecology and Management, 478, [118519]. https://doi.org/10.1016/j.foreco.2020.118519 [details]
- Bos, D., van Loon, E. E., Klop, E., & Ydenberg, R. (2020). A Large-Scale Experiment to Evaluate Control of Invasive Muskrats. Wildlife Society Bulletin, 44(2), 314-322. https://doi.org/10.1002/wsb.1099 [details]
- Kroes, R., Van Loon, E. E., Goverse, E., Schiphouwer, M. E., & Van der Geest, H. G. (2020). Attraction of migrating glass eel (Anguilla anguilla) by freshwater flows from water pumping stations in an urbanized delta system. Science of the Total Environment, 714, [136818]. https://doi.org/10.1016/j.scitotenv.2020.136818 [details]
- Norder, S. J., de Lima, R. F., de Nascimento, L., Lim, J. Y., Fernández-Palacios, J. M., Romeiras, M. M., Elias, R. B., Cabezas, F. J., Catarino, L., Ceríaco, L. M. P., Castilla-Beltrán, A., Gabriel, R., Menezes de Sequeira, M., Rijsdijk, K. F., Nogué, S., Kissling, W. D., van Loon, E. E., Hall, M., Matos, M., & Borges, P. A. V. (2020). Global change in microcosms: Environmental and societal predictors of land cover change on the Atlantic Ocean Islands. Anthropocene, 30, [100242]. https://doi.org/10.1016/j.ancene.2020.100242 [details]
- Sevink, J., de Neef, W., Di Vito, M. A., Arienzo, I., Attema, P. A. J., van Loon, E. E., Ullrich, B., den Haan, M., Ippolito, F., & Noorda, N. (2020). A multidisciplinary study of an exceptional prehistoric waste dump in the mountainous inland of Calabria (Italy): Implications for reconstructions of prehistoric land use and vegetation in Southern Italy. Holocene, 30(9), 1310–1331. https://doi.org/10.1177/0959683620919974 [details]
- Shamoun-Baranes, J., Sage, E., van Erp, J., & van Loon, E. (2020). [Review of: M.R. Perrow (2017) Wildlife and wind farms, conflicts and solutions. - v. 1: Onshore: potential effects; M.R. Perrow (2017) Wildlife and wind farms, conflicts and solutions. - v. 2: Onshore: monitoring and mitigation; M.R. Perrow (2019) Wildlife and wind farms, conflicts and solutions. - v. 3: Offshore: potential effects; M.R. Perrow (2019) Wildlife and wind farms, conflicts and solutions. - v. 4: Offshore: Monitoring and mitigation]. Ibis, 162(3), 1097-1099. https://doi.org/10.1111/ibi.12841 [details]
- Veerman, L., Kalbitz, K., Gundersen, P., Kjønaas, J., Moldan, F., Schleppi, P., van Loon, E. E., Schoorl, J., Wessel, W., & Tietema, A. (2020). The long-term fate of deposited nitrogen in temperate forest soils. Biogeochemistry, 150(1), 1-15. https://doi.org/10.1007/s10533-020-00683-6 [details]
2019
- Bart, M. C., de Vet, S. J., de Bakker, D. M., Alexander, B. E., van Oevelen, D., van Loon, E. E., ... de Goeij, J. M. (2019). Spiculous skeleton formation in the freshwater sponge Ephydatia fluviatilis under hypergravity conditions. PeerJ, 6, [e6055]. https://doi.org/10.7717/peerj.6055 [details]
- Konzack, M., Gijsbers, P., Timmers, F., van Loon, E., Westenberg, M. A., & Buchin, K. (2019). Visual exploration of migration patterns in gull data. Information Visualization, 18(1), 138-152. https://doi.org/10.1177/1473871617751245 [details]
- Muñoz, G., Kissling, W. D., & van Loon, E. E. (2019). Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature. Biodiversity Data Journal, 7, [e28737]. https://doi.org/10.3897/BDJ.7.e28737 [details]
- Norder, S. J., Proios, K., Whittaker, R. J., Alonso, M. R., Borges, P. A. V., Borregaard, M. K., Cowie, R. H., Florens, F. B. V., de Frias Martins, A. M., Ibáñez, M., Kissling, W. D., de Nascimento, L., Otto, R., Parent, C. E., Rigal, F., Warren, B. H., Fernández-Palacios, J. M., van Loon, E. E., Triantis, K. A., & Rijsdijk, K. F. (2019). Beyond the Last Glacial Maximum: Island endemism is best explained by long-lasting archipelago configurations. Global Ecology and Biogeography, 28(2), 184-197. https://doi.org/10.1111/geb.12835 [details]
- Overbeek, C. C., van der Geest, H. G., van Loon, E. E., & Admiraal, W. (2019). Decomposition of Standing Litter Biomass in Newly Constructed Wetlands Associated with Direct Effects of Sediment and Water Characteristics and the Composition and Activity of the Decomposer Community Using Phragmites australis as a Single Standard Substrate. Wetlands, 39(1), 113-125. https://doi.org/10.1007/s13157-018-1081-y [details]
2018
- Golding, N., August, T. A., Lucas, T. C. D., Gavaghan, D. J., van Loon, E. E., & Mcinerny, G. (2018). The zoon r package for reproducible and shareable speciesdistribution modelling. Methods in Ecology and Evolution, 9(2), 260-268. https://doi.org/10.1111/2041-210X.12858 [details]
- Heinen, J. H., van Loon, E. E., Hansen, D. M., & Kissling, W. D. (2018). Extinction-driven changes in frugivore communities on oceanic islands. Ecography, 41(8), 1245–1255. https://doi.org/10.1111/ecog.03462 [details]
- Mantzouki, E., Campbell, J., van Loon, E., Visser, P., Konstantinou, I., Antoniou, M., Giuliani, G., Machado-Vieira, D., Gurjão de Oliveira, A., Špoljarić Maronić, D., Stević, F., Žuna Pfeiffer, T., Bokan Vucelić, I., Žutinić, P., Gligora Udovič, M., Plenković-Moraj, A., Tsiarta, N., Bláha, L., Geriš, R., ... Ibelings, B. W. (2018). A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins. Scientific Data, 5, [180226]. https://doi.org/10.1038/sdata.2018.226 [details]
- McLaren, J. D., Buler, J. J., Schreckengost, T., Smolinsky, J. A., Boone, M., van Loon, E. E., Dawson, D. K., & Walters, E. L. (2018). Artificial light at night confounds broad-scale habitat use by migrating birds. Ecology Letters, 21(3), 356-364. https://doi.org/10.1111/ele.12902 [details]
- Norder, S. J., Baumgartner, J. B., Borges, P. A. V., Hengl, T., Kissling, W. D., van Loon, E. E., & Rijsdijk, K. F. (2018). A global spatially explicit database of changes in island paleo-area and archipelago configuration during the late Quaternary. Global Ecology and Biogeography, 27(5), 500–505. https://doi.org/10.1111/geb.12715 [details]
- Overbeek, C. C., van der Geest, H. G., van Loon, E. E., Klink, A. D., van Heeringen, S., Harpenslager, S. F., & Admiraal, W. (2018). Decomposition of aquatic pioneer vegetation in newly constructed wetlands. Ecological Engineering, 114, 154-161. https://doi.org/10.1016/j.ecoleng.2017.06.046 [details]
- Padget, O., Bond, S. L., Kavelaars, M. M., van Loon, E., Bolton, M., Fayet, A. L., Syposz, M., Roberts, S., & Guilford, T. (2018). In Situ Clock Shift Reveals that the Sun Compass Contributes to Orientation in a Pelagic Seabird. Current Biology, 28(2), 275-279.e2. https://doi.org/10.1016/j.cub.2017.11.062 [details]
- Yang, S., Cammeraat, E., Jansen, B., den Haan, M., van Loon, E., & Recharte, J. (2018). Soil organic carbon stocks controlled by lithology and soil depth in a Peruvian alpine grassland of the Andes. Catena, 171, 11-21. https://doi.org/10.1016/j.catena.2018.06.038 [details]
2017
- Dokter, A. M., van Loon, E. E., Fokkema, W., Lameris, T. K., Nolet, B. A., & van der Jeugd, H. P. (2017). Analyzing time-ordered event data with missed observations. Ecology and Evolution, 7(18), 7362-7369. https://doi.org/10.1002/ece3.3281 [details]
- Dokter, A. M., van Loon, E. E., Rappoldt, C., Oosterbeek, K., Baptist, M. J., Bouten, W., & Ens, B. J. (2017). Balancing food and density-dependence in the spatial distribution of an interference-prone forager. Oikos, 126(8), 1184-1196. https://doi.org/10.1111/oik.04139 [details]
- Muluneh, A., van Loon, E., Bewket, W., Keesstra, S., Stroosnijder, L., & Burka, A. (2017). Effects of long-term deforestation and remnant forests on rainfall and temperature in the Central Rift Valley of Ethiopia. Forest Ecosystems, 4, [23]. https://doi.org/10.1186/s40663-017-0109-8 [details]
- Norder, S. J., Seijmonsbergen, A. C., Rughooputh, S. D. D. V., van Loon, E. E., Tatayah, V., Kamminga, A. T., & Rijsdijk, K. F. (2017). Assessing temporal couplings in social–ecological island systems: historical deforestation and soil loss on Mauritius (Indian Ocean). Ecology and Society, 22(1), [29]. https://doi.org/10.5751/ES-09073-220129 [details]
- Serna-Chavez, H. M., Swenson, N. G., Weiser, M. D., van Loon, E. E., Bouten, W., Davidson, M. D., & van Bodegom, P. M. (2017). Strong biotic influences on regional patterns of climate regulation services. Global Biogeochemical Cycles, 31(5), 787-803. https://doi.org/10.1002/2017GB005627 [details]
- Shamoun-Baranes, J., Burant, J. B., van Loon, E. E., Bouten, W., & Camphuysen, C. J. (2017). Short distance migrants travel as far as long distance migrants in lesser black‐backed gulls Larus fuscus. Journal of Avian Biology, 48(1), 49-57. https://doi.org/10.1111/jav.01229 [details]
- Simaiakis, S. M., Rijsdijk, K. F., Koene, E. F. M., Norder, S. J., Van Boxel, J. H., Stocchi, P., Hammoud, C., Kougioumoutzis, K., Georgopoulou, E., Van Loon, E., Tjørve, K. M. C., & Tjørve, E. (2017). Geographic changes in the Aegean Sea since the Last Glacial Maximum: Postulating biogeographic effects of sea-level rise on islands. Palaeogeography, Palaeoclimatology, Palaeoecology, 471, 108-119. https://doi.org/10.1016/j.palaeo.2017.02.002 [details]
- Tyson, C., Kirk, H., Fayet, A., Van Loon, E. E., Shoji, A., Dean, B., Perrins, C., Freeman, R., & Guilford, T. (2017). Coordinated provisioning in a dual-foraging pelagic seabird. Animal behaviour, 132, 73-79. https://doi.org/10.1016/j.anbehav.2017.07.022 [details]
- van Loon, E. E., Bos, D., van Hellenberg Hubar, C. J., & Ydenberg, R. C. (2017). A historical perspective on the effects of trapping and controlling the muskrat (Ondatra zibethicus) in the Netherlands. Pest Management Science, 73(2), 305-312. https://doi.org/10.1002/ps.4270 [details]
2016
- Lezama-Ochoa, N., Murua, H., Chust, G., Van Loon, E., Ruiz, J., Hall, M., ... Villarino, E. (2016). Present and Future Potential Habitat Distribution of Carcharhinus falciformis and Canthidermis maculata By-Catch Species in the Tropical Tuna Purse-Seine Fishery under Climate Change. Frontiers in Marine Science, 3, [34]. https://doi.org/10.3389/fmars.2016.00034 [details]
- Shamoun-Baranes, J., Bouten, W., van Loon, E. E., Meijer, C., & Camphuysen, C. J. (2016). Flap or soar? How a flight generalist responds to its aerial environment. Philosophical Transactions of the Royal Society B - Biological Sciences, 371(1704), [20150395]. https://doi.org/10.1098/rstb.2015.0395 [details]
- Slingsby, A., & van Loon, E. (2016). Exploratory Visual Analysis for Animal Movement Ecology. Computer Graphics Forum, 35(3), 471-480. https://doi.org/10.1111/cgf.12923 [details]
- Tonneijck, F. H., Velthuis, M., Bouten, W., van Loon, E. E., Sevink, J., & Verstraten, J. M. (2016). The effect of change in soil volume on organic matter distribution in a volcanic ash soil. European Journal of Soil Science, 67(2), 226-236. https://doi.org/10.1111/ejss.12329 [details]
- Villegas, S. S., van Soelen, E. E., Teunissen van Manen, M. L., Flantua, S. G. A., Santos, R. V., Roddaz, M., Dantas, E. L., van Loon, E., Sinninghe Damste, J. S., Kim, J-H., & Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). Journal of Biogeography, 43(12), 2424-2437. https://doi.org/10.1111/jbi.12769 [details]
2015
- Aguirre-Gutiérrez, J., Biesmeijer, J. C., van Loon, E. E., Reemer, M., WallisDeVries, M. F., & Carvalheiro, L. G. (2015). Susceptibility of pollinators to ongoing landscape changes depends on landscape history. Diversity and distributions, 21(10), 1129-1140. https://doi.org/10.1111/ddi.12350 [details]
- Buchin, K., Sijben, S., van Loon, E. E., Sapir, N., Mercier, S., Arseneau, T. J. M., & Willems, E. P. (2015). Deriving movement properties and the effect of the environment from the Brownian bridge movement model in monkeys and birds. Movement Ecology, 3, [18]. https://doi.org/10.1186/s40462-015-0043-8 [details]
- Burns, Z. T., & van Loon, E. E. (2015). A framework to classify error in animal-borne technologies. Frontiers in Ecology and Evolution, 3, [55]. https://doi.org/10.3389/fevo.2015.00055 [details]
- Camphuysen, K. C. J., Shamoun-Baranes, J., van Loon, E. E., & Bouten, W. (2015). Sexually distinct foraging strategies in an omnivorous seabird. Marine Biology, 162(7), 1417-1428. https://doi.org/10.1007/s00227-015-2678-9 [details]
- Cusell, C., Mettrop, I. S., van Loon, E. E., Lamers, L. P. M., Vorenhout, M., & Kooijman, A. M. (2015). Impacts of short-term droughts and inundations in species-rich fens during summer and winter: Large-scale field manipulation experiments. Ecological Engineering, 77, 127-138. https://doi.org/10.1016/j.ecoleng.2015.01.025 [details]
- Meier, R. E., Wynn, R. B., Votier, S. C., McMinn Grivé, M., Rodríguez, A., Maurice, L., van Loon, E. E., Jones, A. R., Suberg, L., Arcos, J. M., Morgan, G., Josey, S. A., & Guilford, T. (2015). Consistent foraging areas and commuting corridors of the critically endangered Balearic shearwater Puffinus mauretanicus in the northwestern Mediterranean. Biological Conservation, 190, 87-97. https://doi.org/10.1016/j.biocon.2015.05.012 [details]
- Nesterova, A. P., Flack, A., van Loon, E. E., Bonadonna, F., & Biro, D. (2015). The effect of experienced individuals on navigation by king penguin chick pairs. Animal behaviour, 104, 69-78. https://doi.org/10.1016/j.anbehav.2015.03.008 [details]
- Taylor-King, J. P., van Loon, E. E., Rosser, G., & Chapman, S. J. (2015). From Birds to Bacteria: Generalised Velocity Jump Processes with Resting States. Bulletin of Mathematical Biology, 77(7), 1213-1236. https://doi.org/10.1007/s11538-015-0083-7 [details]
- Tyson, C., Shamoun-Baranes, J., van Loon, E. E., Camphuysen, C. J., & Hintzen, N. T. (2015). Individual specialization on fishery discards by lesser black-backed gulls (Larus fuscus). ICES Journal of Marine Science, 76(6), 1882-1891. https://doi.org/10.1093/icesjms/fsv021 [details]
- Vansteelant, W. M. G., Bouten, W., Klaassen, R. H. G., Koks, B. J., Schlaich, A. E., van Diermen, J., van Loon, E. E., & Shamoun-Baranes, J. (2015). Regional and seasonal flight speeds of soaring migrants and the role of weather at hourly and daily scales. Journal of Avian Biology, 46(1), 25-39. https://doi.org/10.1111/jav.00457 [details]
- van Andel, T. R., Croft, S., van Loon, E. E., Quiroz, D., Towns, A. M., & Raes, N. (2015). Prioritizing West African medicinal plants for conservation and sustainable extraction studies based on market surveys and species distribution models. Biological Conservation, 181, 173-181. https://doi.org/10.1016/j.biocon.2014.11.015 [details]
2014
- Alexander, B. E., Liebrand, K., Osinga, R., van der Geest, H. G., Admiraal, W., Cleutjens, J. P. M., ... de Goeij, J. M. (2014). Cell turnover and detritus production in marine sponges from tropical and temperate benthic ecosystems. PLoS ONE, 9(10), e109486. https://doi.org/10.1371/journal.pone.0109486 [details]
- Cusell, C., Kooijman, A., Fernandez, F., van Wirdum, G., Geurts, J. J. M., van Loon, E. E., ... Lamers, L. P. M. (2014). Filtering fens: Mechanisms explaining phosphorus-limited hotspots of biodiversity in wetlands adjacent to heavily fertilized areas. Science of the Total Environment, 481, 129-141. https://doi.org/10.1016/j.scitotenv.2014.02.032 [details]
- Demšar, U., Buchin, K., van Loon, E. E., & Shamoun-Baranes, J. (2014). Stacked space-time densities: a geovisualisation approach to explore dynamics of space use over time. GeoInformatica, 19(1), 85-115. https://doi.org/10.1007/s10707-014-0207-5 [details]
- Goldenberg Vilar, A., van Dam, H., van Loon, E. E., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Eutrophication decreases distance decay of similarity in diatom communities. Freshwater Biology, 59(7), 1522-1531. https://doi.org/10.1111/fwb.12363 [details]
- Kopittke, G. R., Tietema, A., van Loon, E., & Asscheman, D. (2014). Fourteen Annually Repeated Droughts Suppressed Autotrophic Soil Respiration and Resulted in an Ecosystem Change. Ecosystems, 17(2), 242-257. https://doi.org/10.1007/s10021-013-9720-x [details]
- Nesterova, A. P., Flack, A., van Loon, E. E., Marescot, Y., Bonadonna, F., & Biro, D. (2014). Resolution of navigational conflict in king penguin chicks. Animal behaviour, 93, 221-228. https://doi.org/10.1016/j.anbehav.2014.04.031 [details]
- Rijsdijk, K. F., Hengl, T., Norder, S. J., Otto, R., Emerson, B. C., Ávila, M. A., ... Fernández-Palacios, J. M. (2014). Quantifying surface-area changes of volcanic islands driven by Pleistocene sea-level cycles: biogeographical implications for the Macaronesian archipelagos. Journal of Biogeography, 41(7), 1242-1254. https://doi.org/10.1111/jbi.12336 [details]
- Vansteelant, W. M. G., Verhelst, B., Shamoun-Baranes, J., Bouten, W., van Loon, E. E., & Bildstein, K. L. (2014). Effect of wind, thermal convection, and variation in flight strategies on the daily rhythm and flight paths of migrating raptors at Georgia's Black Sea coast. Journal of Field Ornithology, 85(1), 40-55. https://doi.org/10.1111/jofo.12048 [details]
- Vicca, S., Bahn, M., Estiarte, M., van Loon, E. E., Vargas, R., Alberti, G., ... Janssens, I. A. (2014). Can current moisture responses predict soil CO2 efflux under altered precipitation regimes? A synthesis of manipulation experiments. Biogeosciences, 11(11), 2991-3013. https://doi.org/10.5194/bg-11-2991-2014 [details]
- Whatley, M. H., van Loon, E. E., Cerli, C., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Linkages between benthic microbial and feshwater insect communities in degraded peatland ditches. Ecological Indicators, 46, 415-425. https://doi.org/10.1016/j.ecolind.2014.06.031 [details]
- Whatley, M. H., van Loon, E. E., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). The role of emergent vegetation in structuring aquatic insect communities in peatland drainage ditches. Aquatic Ecology, 48, 267-283. https://doi.org/10.1007/s10452-014-9482-3 [details]
- Whatley, M. H., van Loon, E., van Dam, H., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Macrophyte loss drives decadal change in benthic invertebrates in peatland drainage ditches. Freshwater Biology, 59(1), 114-126. https://doi.org/10.1111/fwb.12252 [details]
- de Vet, S. J., Merrison, J. P., Mittelmeijer-Hazeleger, M. C., van Loon, E. E., & Cammeraat, L. H. (2014). Effects of rolling on wind-induced detachment thresholds of volcanic glass on Mars. Planetary and Space Science, 103, 205-218. https://doi.org/10.1016/j.pss.2014.07.012 [details]
2013
- Aguirre-Gutiérrez, J., Carvalheiro, L. G., Polce, C., van Loon, E. E., Raes, N., Reemer, M., & Biesmeijer, J. C. (2013). Fit-for-purpose: species distribution model performance depends on evaluation criteria -Dutch hoverflies as a case study. PLoS ONE, 8(5), [e63708]. https://doi.org/10.1371/journal.pone.0063708 [details]
- Dokter, A. M., Baptist, M. J., Ens, B. J., Krijgsveld, K. L., & van Loon, E. (2013). Bird radar validation in the field by time-referencing line-transect surveys. PLoS ONE, 8, e74129. https://doi.org/10.1371/journal.pone.0074129 [details]
- Fleischer, K., Rebel, K. T., van der Molen, M. K., Erisman, J. W., Wassen, M. J., van Loon, E. E., ... Dolman, A. J. (2013). The contribution of nitrogen deposition to the photosynthetic capacity of forests. Global Biogeochemical Cycles, 27(1), 187-199. https://doi.org/10.1002/gbc.20026 [details]
- Kemp, M. U., Shamoun-Baranes, J., Dokter, A. M., van Loon, E., & Bouten, W. (2013). The influence of weather on the flight altitude of nocturnal migrants in mid-latitudes. Ibis, 155(4), 734-749. https://doi.org/10.1111/ibi.12064 [details]
- Kopittke, G. R., Tietema, A., van Loon, E. E., & Kalbitz, K. (2013). The Age of Managed Heathland Communities: Implications for Carbon Storage? Plant and Soil, 369(1-2), 219-230. https://doi.org/10.1007/s11104-012-1558-z [details]
- Kopittke, G. R., van Loon, E. E., Tietema, A., & Asscheman, D. (2013). Soil Respiration on an Aging Managed Heathland: Identifying an Appropriate Empirical Model for Predictive Purposes. Biogeosciences, 10, 3007-3038. https://doi.org/10.5194/bg-10-3007-2013 [details]
- Slingsby, A., & van Loon, E. (2013). Visual Analytics for Exploring Changes in Biodiversity. In O. Kolditz, K. Rink, & G. Scheuermann (Eds.), EnvirVis13: Workshop on Visualisation in Environmental Sciences The Eurographics Association. https://doi.org/10.2312/PE.EnvirVis.EnvirVis13.071-075 [details]
2012
- Kemp, M. U., Shamoun-Baranes, J., van Loon, E. E., McLaren, J. D., Dokter, A. M., & Bouten, W. (2012). Quantifying flow-assistance and implications for movement research. Journal of Theoretical Biology, 308, 56-67. https://doi.org/10.1016/j.jtbi.2012.05.026 [details]
- Kemp, M. U., van Loon, E. E., Shamoun-Baranes, J., & Bouten, W. (2012). RNCEP: global weather and climate data at your fingertips. Methods in Ecology and Evolution, 3, 65-70. https://doi.org/10.1111/j.2041-210X.2011.00138.x [details]
- Klotzbücher, T., Kaiser, K., Stepper, C., van Loon, E., Gerstberger, P., & Kalbitz, K. (2012). Long-term litter input manipulation effects on production and properties of dissolved organic matter in the forest floor of a Norway spruce stand. Plant and Soil, 355(1-2), 407-416. https://doi.org/10.1007/s11104-011-1123-1 [details]
- Shamoun-Baranes, J., Bom, R., van Loon, E. E., Ens, B. J., Oosterbeek, K., & Bouten, W. (2012). From sensor data to animal behaviour: an oystercatcher example. PLoS ONE, 7(5), e37997. [e37997]. https://doi.org/10.1371/journal.pone.0037997 [details]
- Shamoun-Baranes, J., van Loon, E. E., Purves, R. S., Speckmann, B., Weiskopf, D., & Camphuysen, C. J. (2012). Analysis and visualization of animal movement. Biology Letters, 8, 6-9. https://doi.org/10.1098/rsbl.2011.0764 [details]
- Veen, L. E., van Reenen, G. B. A., Sluiter, F. P., van Loon, E. E., & Bouten, W. (2012). A semantically integrated, user-friendly data model for species observation data. Ecological Informatics, 8, 1-9. https://doi.org/10.1016/j.ecoinf.2011.11.002 [details]
2011
- Shamoun-Baranes, J., Dokter, A. M., van Gasteren, H., van Loon, E. E., van Leijnse, H., & Bouten, W. (2011). Birds flee en mass from New Year's Eve fireworks. Behavioral Ecology, 22(6), 1173-1177. https://doi.org/10.1093/beheco/arr102 [details]
- van Loon, E. E., Shamoun-Baranes, J., Bouten, W., & Davis, S. L. (2011). Understanding soaring bird migration through interactions and decisions at the individual level. Journal of Theoretical Biology, 270(1), 112-126. https://doi.org/10.1016/j.jtbi.2010.10.038 [details]
- van Strien, A. J., Dekker, J. J. A., Straver, M., van der Meij, T., Soldaat, L. L., Ehrenburg, A., & van Loon, E. (2011). Occupancy dynamics of wild rabbits (Oryctolagus cuniculus) in the coastal dunes of the Netherlands with imperfect detection. Wildlife Research, 38(8), 717-725. https://doi.org/10.1071/WR11050 [details]
2010
- Hengl, T., Heuvelink, G. B. M., & van Loon, E. E. (2010). On the uncertainty of stream networks derived from elevation data: the error propagation approach. Hydrology and Earth System Sciences, 14(7), 1153-1165. https://doi.org/10.5194/hess-14-1153-2010 [details]
- Jansen, B., van Loon, E. E., Hooghiemstra, H., & Verstraten, J. M. (2010). Improved reconstruction of palaeo-environments through unravelling of preserved vegetation biomarker patterns. Palaeogeography, Palaeoclimatology, Palaeoecology, 285(1-2), 119-130. https://doi.org/10.1016/j.palaeo.2009.10.029 [details]
- Kemp, M. U., Shamoun-Baranes, J., van Gasteren, H., Bouten, W., & van Loon, E. E. (2010). Can wind help explain seasonal differences in avian migration speed? Journal of Avian Biology, 41(6), 672-677. https://doi.org/10.1111/j.1600-048X.2010.05053.x [details]
- Shamoun-Baranes, J., Bouten, W., & van Loon, E. E. (2010). Integrating meteorology into research on migration. Integrative and Comparative Biology, 50(3), 280-292. https://doi.org/10.1093/icb/icq011 [details]
- Shamoun-Baranes, J., Leyrer, J., van Loon, E., Bocher, P., Robin, F., Meunier, F., & Piersma, T. (2010). Stochastic atmospheric assistance and the use of emergency staging sites by migrants. Proceedings of the Royal Society B-Biological Sciences, 277, 1505-1511. https://doi.org/10.1098/rspb.2009.2112 [details]
- Sheikh, V., van Loon, E., Hessel, R., & Jetten, V. (2010). Sensitivity of LISEM predicted catchment discharge to initial soil moisture content of soil profile. Journal of Hydrology, 393(3-4), 174-185. https://doi.org/10.1016/j.jhydrol.2010.08.016 [details]
2009
- Fillinger, U., Sombroek, H., Majambere, S., van Loon, E., Takken, W., & Linsay, S. W. (2009). Identifying the most productive breeding sites for malaria mosquitoes in The Gambia. Malaria Journal, 8, 62. https://doi.org/10.1186/1475-2875-8-62 [details]
- Raes, N., Roos, M. C., Slik, J. W. F., van Loon, E. E., & ter Steege, H. (2009). Botanical richness and endemicity patterns of Borneo derived from species distribution models. Ecography, 32(1), 180-192. https://doi.org/10.1111/j.1600-0587.2009.05800.x [details]
2008
- Hengl, T., van Loon, E. E., Shamoun-Baranes, J., & Bouten, W. (2008). Geostatistical analysis of GPS trajectory data: Space-time densities. In J. Zhang, & M. F. Goodchild (Eds.), Proceedings of the 8th International Symposium on Spatial Accuracy Assessment in Natural Resources and Environmental Sciences: Shanghai, China, June 25-27, 2008: Volume 1: Spatial uncertainty (pp. 17-24). Liverpool: World Academic Press. [details]
- Hengl, T., van Loon, E., Sierdsema, H., & Bouten, W. (2008). Advancing spatio-temporal analysis of ecological data: Examples in R. In O. Gervasi, B. Murgante, A. Laganà, D. Taniar, Y. Mun, & M. L. Gavrilova (Eds.), Computational Science and Its Applications – ICCSA 2008: International Conference, Perugia, Italy, June 30 – July 3, 2008 : proceedings (Vol. I, pp. 692-707). (Lecture Notes in Computer Science; Vol. 5072). Berlin: Springer. https://doi.org/10.1007/978-3-540-69839-5_51 [details]
- Marijnissen, S. A. E., Michel, E., Kamermans, M., Olaya-Bosch, K., Kars, M., Cleary, D. F. R., ... Menken, S. B. J. (2008). Ecological correlates of species differences in the Lake Tanganyika crab radiation. Hydrobiologia, 615(1), 81-94. https://doi.org/10.1007/s10750-008-9566-y [details]
- Shamoun-Baranes, J., Bouten, W., Buurma, L., DeFusco, R., Dekker, A., Sierdsema, H., ... van Loon, E. (2008). Avian information systems: Developing web-based bird avoidance models. Ecology and Society, 13(2), 38. [details]
- Sierdsema, H., & van Loon, E. E. (2008). Filling the gaps: Using count survey data to predict bird density distribution patterns and estimate population sizes. Revista Catalana d’Ornitologia, 24, 88-99. [details]
- Zaugg, S., Saporta, G., van Loon, E., Schmaljohann, H., & Liechti, F. (2008). Automatic identification of bird targets with radar via patterns produced by wing flapping. Journal of the Royal Society Interface, 5(26), 1041-1053. https://doi.org/10.1098/rsif.2007.1349 [details]
- van Gasteren, H., Holleman, I., Bouten, W., van Loon, E., & Shamoun-Baranes, J. (2008). Extracting bird migration information from C-band Doppler weather radars. Ibis, 150(4), 674-686. https://doi.org/10.1111/j.1474-919X.2008.00832.x [details]
- van Meeteren, M. J. M., Tietema, A., van Loon, E. E., & Verstraten, J. M. (2008). Microbial dynamics and litter decomposition under a changed climate in a Dutch heathland. Applied Soil Ecology, 38(2), 119-127. https://doi.org/10.1016/j.apsoil.2007.09.006 [details]
2020
- Bouten, W., Kleyheeg-Hartman, J., Klop, E., Potiek, A., Shinneman, S., & van Loon, E. (2020). Haalbaarheidsstudie naar een voorspellend vogeltrekmodel en een stilstandvoorziening om vogelsterfte te beperken in Windpark Eemshaven. Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam. https://www.provinciegroningen.nl/fileadmin/user_upload/Documenten/Downloads/Downloads_2020/Integratierapport_trekvogels_Eemshaven.pdf [details]
- Shinneman, S. M., van Loon, E. E., Wijers, B. C., & Bouten, W. (2020). Prediction and measurement of high intensity bird migration using meteorological radar data in Eemshaven windpark. Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam. https://www.provinciegroningen.nl/fileadmin/user_upload/Documenten/Downloads/Downloads_2020/Rapport_UvA_voorspellen_en_metingen_intensieve_vogeltrek_met_de_weerradar.pdf [details]
2017
- van Boxel, J. H., Brandts, E. B., Flantua, S. G. A., Grimm, E. C., Hooghiemstra, H., & van Loon, E. E. (2017). Data description for the DANS project: Disclosure of paleoecological datasets of IBED, FNWI, UvA. Den Haag: DANS. https://doi.org/10.17026/dans-zg3-b2jf [details]
- van Boxel, J. H., Brandts, E. B., Grimm, E., Flantua, S. G. A., Hooghiemstra, H., & van Loon, E. E. (2017). Kleine Data Projecten - Eindrapportage: Ontsluiting van paleoecologische datasets van IBED, FNWI, UvA. Den Haag: DANS. [details]
2013
- Demšar, U., & van Loon, E. E. (2013). Visualising movement: The seagull. Significance, 10(5), 40-42. https://doi.org/10.1111/j.1740-9713.2013.00698.x
2012
- Norder, S., Rijsdijk, K. F., Seijmonsbergen, H., van Loon, E., Rughooputh, S., & Kamminga, T. (2012). Vruchtbare bodems van Mauritius verdwijnen in zee. Geografie, 21(4), 34-36. [details]
2016
- Sterk, H. P., Seijmonsbergen, A. C., de Jong, M. G. G., & van Loon, E. E. (2016). Progress in digital mapping of shallow mass movements by using a combination of orthophotos, LiDAR- and UAV-derived information. 319. Abstract from GeoTirol 2016, Innsbruck, Austria.
2012
- Whatley, M. H., van Loon, E. E., van Dam, H., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2012). Vegetation governs aquatic invertebrate composition in agricultural peatlands. Paper presented at New Zealand Freshwater Sciences Society Conference, .
Journal editor
- van Loon, E. (reviewer) (2016). Scientific Data (Journal).
2021
- van Erp, J., van Loon, E., Camphuysen, K. C. J. & Shamoun-Baranes, J. (23-3-2021). Data and analysis script for analysing temporal patterns in bird abundance on the North Sea. Universiteit van Amsterdam. https://doi.org/10.21942/uva.14261609.v1.
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Ancillary activities
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Corradini, A., Randles, M., Pedrotti, L., van Loon, E., Passoni, G., Oberosler, V., Rovero, F., Tattoni, C., Ciolli, M., & Cagnacci, F. (2021). Effects of cumulated outdoor activity on wildlife habitat use. Biological Conservation, 253, [108818].