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Bai, X., Dinkla, I. J. T., & Muyzer, G. (2022). Microbial ecology of biofiltration used for producing safe drinking water. Applied Microbiology and Biotechnology, 106(13-16), 4813-4829. https://doi.org/10.1007/s00253-022-12013-x
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G., & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. BMC Genomics, 23, [674]. https://doi.org/10.1186/s12864-022-08893-y[details]
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251762.v1
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251756.v1
Gupta, S., Plugge, C. M., Klok, J. B. M., & Muijzer, G. (2022). Comparative analysis of microbial communities from different full‑scale haloalkaline biodesulfurization systems. Applied Microbiology and Biotechnology, 106, 1759–1776. https://doi.org/10.1007/s00253-022-11771-y[details]
Hudspith, M., de Goeij, J. M., Streekstra, M., Kornder, N. A., Bougoure, J., Guagliardo, P., Campana, S., van der Wel, N. N., Muijzer, G., & Rix, L. (2022). Harnessing solar power: photoautotrophy supplements the diet of a low-light dwelling sponge. The ISME Journal, 16, 2076–2086. https://doi.org/10.1038/s41396-022-01254-3[details]
Ahn, A-C., Jongepier, E., Schuurmans, J. M., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Galinski, E. A., Roman, P., Sorokin, D., & Muyzer, G. (2021). Molecular and Physiological Adaptations to Low Temperature in Thioalkalivibrio Strains Isolated from Soda Lakes with Different Temperature Regimes. mSystems, 6(2), [e01202-20]. https://doi.org/10.1128/mSystems.01202-20[details]
Campana, S., Demey, C., Busch, K., Hentschel, U., Muijzer, G., & de Goeij, J. M. (2021). Marine sponges maintain stable bacterial communities between reef sites with different coral to algae cover ratios. FEMS Microbiology Ecology, 97(9), [fiab115]. https://doi.org/10.1093/femsec/fiab115[details]
Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M., & de Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: Insights into the ecological success of an early metazoan–microbe symbiosis. Microbiome, 9, [44]. https://doi.org/10.1186/s40168-020-00984-w[details]
Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M. & De Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan–microbe symbiosis. DRYAD. https://doi.org/10.5061/dryad.6hdr7sr0n
Piel, T., Sandrini, G., Muyzer, G., Brussaard, C. P. D., Slot, P. C., van Herk, M. J., Huisman, J., & Visser, P. M. (2021). Resilience of microbial communities after hydrogen peroxide treatment of a eutrophic lake to suppress harmful cyanobacterial blooms. Microorganisms, 9(7), [1495]. https://doi.org/10.3390/microorganisms9071495[details]
Sevink, J., Muijzer, G., Arienzo, I., Mormone, A., Piochi, M., Alessandri, L., van Hall, R. L., Palstra, S. W. L., & Dee, M. W. (2021). The protohistoric briquetage at Puntone (Tuscany, Italy): A multidisciplinary attempt to unravel its age and role in the salt supply of Early States in Tyrrhenian Central Italy. Journal of Archaeological Science: Reports, 38, [103055]. https://doi.org/10.1016/j.jasrep.2021.103055[details]
Popall, R. M., Bolhuis, H., Muyzer, G., & Sánchez-Román, M. (2020). Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture. Frontiers in Microbiology, 11, [948]. https://doi.org/10.3389/fmicb.2020.00948[details]
Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I., & Popov, V. O. (2020). Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America, 117(10), 5280-5290. https://doi.org/10.1073/pnas.1922133117[details]
Tüccar, T., Ilhan-Sungur, E., & Muyzer, G. (2020). Bacterial community composition in produced water of Diyarbakır oil fields in Turkey Bacterial communities in produced waters of south-eastern Turkey reported in detail for the first time. Johnson Matthey Technology Review, 64(4), 452-465. https://doi.org/10.1595/205651320X15911723486216[details]
Ahn, A-C., Cavalca, L., Colombo, M., Schuurmans, J. M., Sorokin, D. Y., & Muyzer, G. (2019). Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway. Frontiers in Microbiology, 10, [1514]. https://doi.org/10.3389/fmicb.2019.01514[details]
Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2019). Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads. Frontiers in Microbiology, 9, [3283]. https://doi.org/10.3389/fmicb.2018.03283[details]
Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2019). Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Frontiers in Microbiology, 10, [160]. https://doi.org/10.3389/fmicb.2019.00160[details]
Borrel, G., Adam, P. S., McKay, L. J., Chen, L-X., Sierra-García, I. N., Sieber, C. M. K., ... Gribaldo, S. (2019). Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nature Microbiology, 4(4), 603-613. https://doi.org/10.1038/s41564-019-0363-3[details]
Cavalca, L., Zecchin, S., Zaccheo, P., Abbas, B., Rotiroti, M., Bonomi, T., & Muyzer, G. (2019). Exploring Biodiversity and Arsenic Metabolism of Microbiota Inhabiting Arsenic-Rich Groundwaters in Northern Italy. Frontiers in Microbiology, 10, [1480]. https://doi.org/10.3389/fmicb.2019.01480[details]
Stouten, G. R., Hogendoorn, C., Douwenga, S., Kilias, E. S., Muyzer, G., & Kleerebezem, R. (2019). Temperature as competitive strategy determining factor in pulse-fed aerobic bioreactors. The ISME Journal, 13(12), 3112-3125. https://doi.org/10.1038/s41396-019-0495-8[details]
Tsallagov, S. I., Sorokin, D. Y., Tikhonova, T. V., Popov, V. O., & Muyzer, G. (2019). Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. Frontiers in Microbiology, 10, [898]. https://doi.org/10.3389/fmicb.2019.00898[details]
Tüccar, T., Ilhan-Sungur, E., Abbas, B., & Muyzer, G. (2019). Coexistence of sulfate reducers with the other oil bacterial groups in Diyarbakır oil fields. Anaerobe, 59, 19-31. https://doi.org/10.1016/j.anaerobe.2019.04.008[details]
Vavourakis, C. D., Mehrshad, M., Balkema, C., van Hall, R., Andrei, A. -Ş., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2019). Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. BMC Biology, 17, [69]. https://doi.org/10.1186/s12915-019-0688-7[details]
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168761.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.1. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168296.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.4. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169232.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.3. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169112.v1
2018
Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2018). Unraveling seaweeds bacteriomes: From field site to computer screen. In B. Charrier, T. Wichard, & C. R. K. Reddy (Eds.), Protocols for Macroalgae Research (pp. 95-113). Boca Raton, FL: CRC Press. [details]
Cúcio, C., Overmars, L., Engelen, A. H., & Muyzer, G. (2018). Metagenomic Analysis Shows the Presence of Bacteria Related to Free-Living Forms of Sulfur-Oxidizing Chemolithoautotrophic Symbionts in the Rhizosphere of the Seagrass Zostera marina. Frontiers in Marine Science, 5, [171]. https://doi.org/10.3389/fmars.2018.00171[details]
Diao, M., Huisman, J., & Muyzer, G. (2018). Spatio-temporal dynamics of sulfur bacteria during oxic-anoxic regime shifts in a seasonally stratified lake. FEMS Microbiology Ecology, 94(4), [fiy040]. https://doi.org/10.1093/femsec/fiy040[details]
Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., ... Plugge, C. M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Frontiers in Microbiology, 9, [3039]. https://doi.org/10.3389/fmicb.2018.03039[details]
Vavourakis, C. D., Andrei, A-S., Mehrshad, M., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2018). A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Microbiome, 6, [168]. https://doi.org/10.1186/s40168-018-0548-7[details]
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168761.v1
2017
Ahn, A-C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. Y., & Muyzer, G. (2017). Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS ONE, 12(3), [e0173517]. https://doi.org/10.1371/journal.pone.0173517[details]
Berben, T., Balkema, C., Sorokin, D. Y., & Muyzer, G. (2017). Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics. mSystems, 2(6), [e00102-17]. https://doi.org/10.1128/mSystems.00102-17[details]
Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2017). Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes. Frontiers in Microbiology, 8, [254]. https://doi.org/10.3389/fmicb.2017.00254[details]
Bush, T., Diao, M., Allen, R. J., Sinnige, R., Muijzer, G., & Huisman, J. (2017). Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics. Nature Communications, 8, [789]. https://doi.org/10.1038/s41467-017-00912-x[details]
Diao, M., Sinnige, R., Kalbitz, K., Huisman, J., & Muyzer, G. (2017). Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic Hypolimnion. Frontiers in Microbiology, 8, [2511]. https://doi.org/10.3389/fmicb.2017.02511[details]
Ilhan-Sungur, E., Ozuolmez, D., Çotuk, A., Cansever, N., & Muyzer, G. (2017). Isolation of a sulfide-producing bacterial consortium from cooling tower water: Evaluation of corrosive effects on galvanized steel. Anaerobe, 43, 27-34. https://doi.org/10.1016/j.anaerobe.2016.11.005[details]
Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., ... Muyzer, G. (2017). Draft genome sequence of Dethiobacter alkaliphilus strain AHT1(T), a gram-positive sulfidogenic polyextremophile. Standards in Genomic Sciences, 12, [57]. https://doi.org/10.1186/s40793-017-0268-9[details]
Belila, A., El-Chakhtoura, J., Otaibi, N., Muyzer, G., Gonzalez-Gil, G., Saikaly, P. E., ... Vrouwenvelder, J. S. (2016). Bacterial community structure and variation in a full-scale seawater desalination plant for drinking water production. Water Research, 94, 62-72. https://doi.org/10.1016/j.watres.2016.02.039[details]
Cúcio, C., Engelen, A. H., Costa, R., & Muyzer, G. (2016). Rhizosphere microbiomes of European seagrasses are selected by the plant, but are not species specific. Frontiers in Microbiology, 7, [440]. https://doi.org/10.3389/fmicb.2016.00440[details]
Melton, E. D., Sorokin, D. Y., Overmars, L., Chertkov, O., Clum, A., Pillay, M., ... Muyzer, G. (2016). Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Standards in Genomic Sciences, 11, [67]. https://doi.org/10.1186/s40793-016-0184-4[details]
Muijzer, G. (2016). Marine Microbial Systems Ecology: Microbial Networks in the Sea. In L. J. Stal, & M. S. Cretoiu (Eds.), The Marine Microbiome: An Untapped Source of Biodiversity and Biotechnological Potential (pp. 335-344). Springer. https://doi.org/10.1007/978-3-319-33000-6_12[details]
Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D. Y., Tringe, S. G., Hugenholtz, P., & Muyzer, G. (2016). Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Frontiers in Microbiology, 7, [211]. https://doi.org/10.3389/fmicb.2016.00211[details]
Bassin, J. P., Abbas, B., Vilela, C. L. S., Kleerebezem, R., Muyzer, G., Rosado, A. S., ... Dezotti, M. (2015). Tracking the dynamics of heterotrophs and nitrifiers in moving-bed biofilm reactors operated at different COD/N ratios. Bioresource Technology, 192, 131-141. https://doi.org/10.1016/j.biortech.2015.05.051[details]
Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. Standards in Genomic Sciences, 10, [105]. https://doi.org/10.1186/s40793-015-0097-7[details]
Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification. Standards in Genomic Sciences, 10, [84]. https://doi.org/10.1186/s40793-015-0080-3[details]
Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T. Standards in Genomic Sciences, 10, [85]. https://doi.org/10.1186/s40793-015-0078-x[details]
Corsini, A., Colombo, M., Muyzer, G., & Cavalca, L. (2015). Characterization of the arsenite oxidizer Aliihoeflea sp. strain 2WW and its potential application in the removal of arsenic from groundwater in combination with Pf-ferritin. Antonie van Leeuwenhoek, 108(3), 673-684. https://doi.org/10.1007/s10482-015-0523-2[details]
Muntyan, M. S., Cherepanov, D. A., Malinen, A. M., Bloch, D. A., Sorokin, D. Y., Severina, I. I., ... Skulachev, V. P. (2015). Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase. Proceedings of the National Academy of Sciences of the United States of America, 112(25), 7695-7700. https://doi.org/10.1073/pnas.1417071112[details]
Corsini, A., Cavalca, L., Muyzer, G., & Zaccheo, P. (2014). Effectiveness of various sorbents and biological oxidation in the removal of arsenic species from groundwater. Environmental Chemistry, 11(5), 558-565. https://doi.org/10.1071/EN13210[details]
Corsini, A., Zaccheo, P., Muyzer, G., Andreoni, V., & Cavalca, L. (2014). Arsenic transforming abilities of groundwater bacteria and the combined use of Aliihoeflea sp. strain 2WW and goethite in metalloid removal. Journal of Hazardous Materials, 269, 89-97. https://doi.org/10.1016/j.jhazmat.2013.12.037[details]
Kuever, J., Visser, M., Loeffler, C., Boll, M., Worm, P., Sousa, D. Z., ... Stams, A. J. M. (2014). Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium. Standards in Genomic Sciences, 9(3), 821-839. https://doi.org/10.4056/sigs.5209235[details]
Marty, F., Gueuné, H., Malard, E., Sánchez-Amaya, J. M., Sjögren, L., Abbas, B., ... Muyzer, G. (2014). Identification of key factors in Accelerated Low Water Corrosion through experimental simulation of tidal conditions: influence of stimulated indigenous microbiota. BIOFOULING, 30(3), 281-297. https://doi.org/10.1080/08927014.2013.864758[details]
Marty, F., van Loosdrecht, M., & Muyzer, G. (2014). Molecular Characterization of Microbial Communities Associated with Accelerated Low-water Corrosion (ALWC) on European Harbour Structures. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 55-67). Norfolk: Caister Academic Press. [details]
Muyzer, G., & Marty, F. (2014). Molecular Methods in Microbiologically Influenced Corrosion Research, Monitoring and Control. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 7-22). Norfolk: Caister Academic Press. [details]
Oueriaghli, N., González-Domenech, C. M., Martínez-Checa, F., Muyzer, G., Ventosa, A., Quesada, E., & Béjar, V. (2014). Diversity and distribution of Halomonas in Rambla Salada, a hypersaline environment in the southeast of Spain. FEMS Microbiology Ecology, 87(2), 460-474. https://doi.org/10.1111/1574-6941.12237[details]
Sandrini, G., Matthijs, H. C. P., Verspagen, J. M. H., Muyzer, G., & Huisman, J. (2014). Genetic diversity of inorganic carbon uptake systems causes variation in CO2 response of the cyanobacterium Microcystis. The ISME Journal, 8, 589-600. https://doi.org/10.1038/ismej.2013.179[details]
Sorokin, D. Y., Abbas, B., Tourova, T. P., Bumazhkin, B. K., Kolganova, T. V., & Muyzer, G. (2014). Sulfate-dependent acetate oxidation under extremely natron-alkaline conditions by syntrophic associations from hypersaline soda lakes. Microbiology, 160(4), 723-732. https://doi.org/10.1099/mic.0.075093-0[details]
Sorokin, D. Y., Berben, T., Melton, E. D., Overmars, L., Vavourakis, C. D., & Muyzer, G. (2014). Microbial diversity and biogeochemical cycling in soda lakes. Extremophiles, 18(5), 791-809. https://doi.org/10.1007/s00792-014-0670-9[details]
Sorokin, D. Y., Gumerov, V. M., Rakitin, A. L., Beletsky, A. V., Sinninghe Damsté, J. S., Muyzer, G., ... Ravin, N. V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environmental Microbiology, 16(6), 1549-1565. https://doi.org/10.1111/1462-2920.12284[details]
Sorokin, D. Y., Vejmelkova, D., Lücker, S., Streshinskaya, G. M., Rijpstra, W. I. C., Sinninghe Damste, J. S., ... Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. International Journal of Systematic and Evolutionary Microbiology, 64(6), 1859-1865. https://doi.org/10.1099/ijs.0.062232-0[details]
Suzuki, S., Kuenen, J. G., Schipper, K., van der Velde, S., Ishii, S., Wu, A., ... Nealson, K. H. (2014). Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site. Nature Communications, 5, 3900. https://doi.org/10.1038/ncomms4900[details]
Visser, M., Parshina, S. N., Alves, J. I., Sousa, D. Z., Pereira, I. A. C., Muyzer, G., ... Stams, A. J. M. (2014). Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans. Standards in Genomic Sciences, 9(3), 655-675. https://doi.org/10.4056/sigs.4718645[details]
Belila, A., Abbas, B., Fazaa, I., Saidi, N., Snoussi, M., Hassen, A., & Muyzer, G. (2013). Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon. Applied Microbiology and Biotechnology, 97(1), 379-394. https://doi.org/10.1007/s00253-012-3931-5[details]
Besaury, L., Marty, F., Buquet, S., Mesnage, V., Muijzer, G., & Quillet, L. (2013). Culture-Dependent and Independent Studies of Microbial Diversity in Highly Copper-Contaminated Chilean Marine Sediments. Microbial Ecology, 65(2), 311-324. https://doi.org/10.1007/s00248-012-0120-0[details]
Cavalca, L., Corsini, A., Andreoni, V., & Muyzer, G. (2013). Draft genome sequence of the arsenite-oxidizing strain Aliihoeflea sp. 2WW, isolated from arsenic-contaminated groundwater. Genome Announcements, 1(6), e1072-13. https://doi.org/10.1128/genomeA.01072-13[details]
Cavalca, L., Corsini, A., Zaccheo, P., Andreoni, V., & Muyzer, G. (2013). Microbial transformations of arsenic: perspectives for biological removal of arsenic from water. Future Microbiology, 8(6), 753-768. https://doi.org/10.2217/FMB.13.38[details]
Chen, B. S., Otten, L. G., Resch, V., Muyzer, G., & Hanefeld, U. (2013). Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. Standards in Genomic Sciences, 9(1), 175-184. https://doi.org/10.4056/sigs.4418165[details]
Muyzer, G., Kuenen, J. G., & Robertson, L. A. (2013). Colorless Sulfur Bacteria. In E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes: Prokaryotic Physiology and Biochemistry (pp. 555-588). Springer. https://doi.org/10.1007/978-3-642-30141-4_78[details]
Sorokin, D. Y., Banciu, H., Robertson, L. A., Kuenen, J. G., Muntyan, M. S., & Muyzer, G. (2013). Halophilic and haloalkaliphilic sulfur-oxidizing bacteria. In E. Rosenberg, F. DeLong, E. Delong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes : Prokaryotic Physiology and Biochemistry (pp. 529-554). Springer. https://doi.org/10.1007/978-3-642-30141-4_77[details]
Sorokin, D. Y., Tourova, T. P., & Muyzer, G. (2013). Isolation and characterization of two novel alkalitolerant sulfidogens from a Thiopaq bioreactor, Desulfonatronum alkalitolerans sp. nov., and Sulfurospirillum alkalitolerans sp. nov. Extremophiles, 17(3), 535-543. https://doi.org/10.1007/s00792-013-0538-4[details]
Tourova, T. P., Slobodova, N. V., Bumazhkin, B. K., Kolganova, T. V., Muijzer, G., & Sorokin, D. Y. (2013). Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes using soxB as a functional molecular marker. FEMS Microbiology Ecology, 84(2), 280-289. https://doi.org/10.1111/1574-6941.12056[details]
Visser, M., Worm, P., Muyzer, G., Pereira, I. A. C., Schaap, P. J., Plugge, C. M., ... Stams, A. J. M. (2013). Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT. Standards in Genomic Sciences, 8(1), 69-87. https://doi.org/10.4056/sigs.3627141[details]
Vissers, E. W., Anselmetti, F. S., Bodelier, P. L. E., Muyzer, G., Schleper, C., Tourna, M., & Laanbroek, H. J. (2013). Temporal and spatial coexistence of archaeal and bacterial amoA genes and gen transcripts in Lake Lucerne. Archaea, 2013, 289478. https://doi.org/10.1155/2013/289478[details]
Vissers, E. W., Blaga, C. I., Bodelier, P. L. E., Muyzer, G., Schleper, C., Sinninghe Damsté, J. S., ... Laanbroek, H. J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiology Ecology, 83(2), 515-526. https://doi.org/10.1111/1574-6941.12013[details]
2012
Marty, F., Ghiglione, J-F., Païssé, S., Gueuné, H., Quillet, L., van Loosdrecht, M. C. M., & Muyzer, G. (2012). Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corrored steel. BIOFOULING, 28(4), 363-380. https://doi.org/10.1080/08927014.2012.672644[details]
Sorokin, D. Y., Lücker, S., Vejmelkova, D., Kostrikina, N. A., Kleerebezem, R., Rijpstra, W. I. C., ... Daims, H. (2012). Nitrification expanded: discovery, physiology, and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexii. The ISME Journal, 6(12), 2245-2256. https://doi.org/10.1038/ismej.2012.70[details]
Sorokin, D. Y., Muntyan, M. S., Panteleeva, A. N., & Muyzer, G. (2012). Thioalkalivibrio sulfidophilus sp. nov., a haloalkaliphilic sulfur-oxidizing gammaproteobacterium from alklaine habitats. International Journal of Systematic and Evolutionary Microbiology, 62(8), 1884-1889. https://doi.org/10.1099/ijs.0.034504-0[details]
Sorokin, D. Y., Tourova, T. P., Abbas, B., Suhacheva, M. V., & Muyzer, G. (2012). Desulfonatronovibrio halophilus sp. nov., a novel moderately halophilic sulfate-reducing bacterium from hypersaline chloride-sulfate lakes in Central Asia. Extremophiles, 16(3), 411-417. https://doi.org/10.1007/s00792-012-0440-5[details]
Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Desulfonatronobacter acidivorans gen. nov., sp. nov., and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes. International Journal of Systematic and Evolutionary Microbiology, 62(9), 2107-2113. https://doi.org/10.1099/ijs.0.029777-0[details]
Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., Kaparullina, E. N., & Muyzer, G. (2012). Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes. Extremophiles, 16(2), 307-315. https://doi.org/10.1007/s00792-012-0431-6[details]
Sorokin, D. Y., Tourova, T. P., Sukhacheva, M. V., & Muyzer, G. (2012). Desulfuribacillus alkaliarsenatis gen. nov., sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes. Extremophiles, 16(4), 597-605. https://doi.org/10.1007/s00792-012-0459-7[details]
Sorokin, D. Y., Zacharova, E. E., Pimenov, N. V., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Sulfidogenesis in hypersaline chloride-sulfate lakes of Kulunda Steppe (Altai, Russia). FEMS Microbiology Ecology, 79(2), 445-453. https://doi.org/10.1111/j.1574-6941.2011.01228.x[details]
Vejmelkova, D., Sorokin, D. Y., Abbas, B., Kovaleva, O. L., Kleerebezem, R., Kampschreur, M. J., ... van Loosdrecht, M. C. M. (2012). Analysis of ammonia-oxidizing bacteria dominating in lab-scale bioreactors with high ammonium bicarbonate loading. Applied Microbiology and Biotechnology, 93(1), 401-410. https://doi.org/10.1007/s00253-011-3409-x[details]
Wang, J., Krause, S., Muyzer, G., Meima-Franke, M., Laanbroek, H. J., & Bodelier, P. L. E. (2012). Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland. Frontiers in Microbiology, 3, 64. [64]. https://doi.org/10.3389/fmicb.2012.00064[details]
de Graaff, M., Klok, J. B. M., Bijmans, M. F. M., Muyzer, G., & Janssen, A. J. H. (2012). Application of a 2-step process for the biological treatment of sulfidic spent caustics. Water Research, 46(3), 723-730. https://doi.org/10.1016/j.watres.2011.11.044[details]
2011
Bassin, J. P., Pronk, M., Muijzer, G., Kleerebezem, R., Dezotti, M., & van Loosdrecht, M. C. M. (2011). Effect of elevated salt concentrations on the aerobic granular sludge process: linking microbial activity with microbial community structure. Applied and Environmental Microbiology, 77(22), 7942-7953. https://doi.org/10.1128/AEM.05016-11
Jiang, Y., Hebly, M., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Metabolic modeling of mixed substrate uptake for polyhydroxyalkanoate (PHA) production. Water Research, 45(3), 1309-1321. https://doi.org/10.1016/j.watres.2010.10.009[details]
Jiang, Y., Marang, L., Kleerebezem, R., Muijzer, G., & van Loosdrecht, M. C. M. (2011). Polyhydroxybutyrate production from lactate using a mixed microbial culture. Biotechnology and Bioengineering, 108(9), 2022-2035. https://doi.org/10.1002/bit.23148[details]
Jiang, Y., Marang, L., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Effect of temperature and cycle length on microbial competition in PHB-producing sequencing batch reactor. The ISME Journal, 5(5), 896-907. https://doi.org/10.1038/ismej.2010.174[details]
Jiang, Y., Sorokin, D. Y., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. (2011). Plasticicumulans acidivorans gen. nov., sp nov., a polyhydroxyalkanoate-accumulating gammaproteobacterium from a sequencing-batch bioreactor. International Journal of Systematic and Evolutionary Microbiology, 61(9), 2314-2319. https://doi.org/10.1099/ijs.0.021410-0[details]
Kovaleva, O. L., Tourova, T. P., Muyzer, G., Kolganova, T. V., & Sorokin, D. Y. (2011). Diversity of RuBisCO and ATP citrate lyase genes in soda lake sediments. FEMS Microbiology Ecology, 75(1), 37-47. https://doi.org/10.1111/j.1574-6941.2010.00996.x[details]
Muijzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Foster, B., Sun, H., ... Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sp. K90mix. Standards in Genomic Sciences, 5(3), 341-355. https://doi.org/10.4056/sigs.2315092[details]
Muyzer, G., & Sorokin, D. Y. (2011). Molecular mechanisms of adaptation to pH stress in microorganisms. In S. Casella (Ed.), Microbial diversity 2011: environmental stress and adaptation., MD 2011: proceedings of the First International Conference on Micro Diversity 2011 - environmental stress and adaption, MD 2011, 26 - 28 October 2011, Milan, Italy (pp. 27-32). San Casciano Val di Pesa, Firenze: Società Italiana di Microbiologia Agro-Alimentare e Ambientale. [details]
Muyzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Clum, A., Ivanova, N., ... Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7. Standards in Genomic Sciences, 4(1), 23-35. https://doi.org/10.4056/sigs.1483693[details]
Sorokin, D. Y., Detkova, E. N., & Muijzer, G. (2011). Sulfur-dependent respiration under extremely haloalkaline conditions in soda lake ‘acetogens’ and the description of Natroniella sulfidigena sp. nov. FEMS Microbiology Letters, 319(1), 88-95. https://doi.org/10.1111/j.1574-6968.2011.02272.x[details]
Sorokin, D. Y., Kuenen, J. G., & Muijzer, G. (2011). The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Frontiers in Microbiology, 2, [44]. https://doi.org/10.3389/fmicb.2011.00044[details]
Sorokin, D. Y., Panteleeva, A. N., Tourova, T. P., Kaparullina, E. N., & Muijzer, G. (2011). Natronoflexus pectinivorans gen. nov. sp. nov., an obligately anaerobic and alkaliphilic fermentative member of Bacteroidetes from soda lakes. Extremophiles, 15(6), 691-696. https://doi.org/10.1007/s00792-011-0399-7[details]
Sorokin, D. Y., Tourova, T. P., Kolganova, T. V., Detkova, E. N., Galinski, E. A., & Muyzer, G. (2011). Culturable diversity of lithotrophic haloalkaliphilic sulfate-reducing bacteria in soda lakes and the description of Desulfonatronum thioautotrophicum sp. nov., Desulfonatronum thiosulfatophilum sp. nov., Desulfonatronovibrio thiodismutans sp. nov., and Desulfonatronovibrio magnus sp. nov. Extremophiles, 15(3), 391-401. https://doi.org/10.1007/s00792-011-0370-7[details]
Wang, J., Vollrath, S., Behrends, T., Bodelier, P. L. E., Muyzer, G., Meima-Franke, M., ... Laanbroek, H. J. (2011). Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh. Applied and Environmental Microbiology, 77(7), 2337-2344. https://doi.org/10.1128/AEM.02448-10[details]
de Graaff, M., Bijmans, M. F. M., Abbas, B., Euverink, G. J. W., Muijzer, G., & Janssen, A. J. H. (2011). Biological treatment of refinery spent caustics under halo-alkaline conditions. Bioresource Technology, 102(15), 7257-7264. https://doi.org/10.1016/j.biortech.2011.04.095[details]
2009
Vanelslander, B., Créach, V., Vanormelingen, P., Ernst, A., Chepurnov, V. A., Sahan, E., ... Sabbe, K. (2009). Ecological differentiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae). Journal of phycology, 45(6), 1278-1289. https://doi.org/10.1111/j.1529-8817.2009.00762.x[details]
2013
Muijzer, G. (2013). Microbiële Systeemecologie: van beschrijvend naar verklarend onderzoek. (Oratiereeks). Amsterdam: Vossiuspers UvA. [details]
Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). The discovery of Nanohaloarchaea in metagenomes of Siberian hypersaline soda brines.
Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). “Nanohaloarchaea” Population Genomes In Metagenomes From Siberian Hypersaline Soda Brines.
Prize / grant
Muyzer, G. (2013). ERC Advanced Grant PARASOL.
2022
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251762.v1
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251756.v1
Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.c.6225476.v1
2021
Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M. & De Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan–microbe symbiosis. DRYAD. https://doi.org/10.5061/dryad.6hdr7sr0n
2019
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.3. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169112.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.1. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168296.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.4. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169232.v1
Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168761.v1
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