Prof. dr. G. (Gerard) Muijzer
Professor of Microbial Systems Ecology
Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
- Science Park 904
- Room number: C4.227
Postal address
- Postbus 94240
1090 GE Amsterdam
Contact details
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Profiel
www.muyzer.eu
Personal website
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Publications
2022
Bai, X., Dinkla, I. J. T., & Muyzer, G. (2022). Microbial ecology of biofiltration used for producing safe drinking water. Applied Microbiology and Biotechnology, 106(13-16), 4813-4829. https://doi.org/10.1007/s00253-022-12013-x- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G., & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. BMC Genomics, 23, [674]. https://doi.org/10.1186/s12864-022-08893-y [details]
- Gupta, S., Plugge, C. M., Klok, J. B. M., & Muijzer, G. (2022). Comparative analysis of microbial communities from different full‑scale haloalkaline biodesulfurization systems. Applied Microbiology and Biotechnology, 106, 1759–1776. https://doi.org/10.1007/s00253-022-11771-y [details]
- Hudspith, M., de Goeij, J. M., Streekstra, M., Kornder, N. A., Bougoure, J., Guagliardo, P., Campana, S., van der Wel, N. N., Muijzer, G., & Rix, L. (2022). Harnessing solar power: photoautotrophy supplements the diet of a low-light dwelling sponge. The ISME Journal, 16, 2076–2086. https://doi.org/10.1038/s41396-022-01254-3 [details]
2021
- Ahn, A-C., Jongepier, E., Schuurmans, J. M., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Galinski, E. A., Roman, P., Sorokin, D., & Muyzer, G. (2021). Molecular and Physiological Adaptations to Low Temperature in Thioalkalivibrio Strains Isolated from Soda Lakes with Different Temperature Regimes. mSystems, 6(2), [e01202-20]. https://doi.org/10.1128/mSystems.01202-20 [details]
- Campana, S., Busch, K., Hentschel, U., Muijzer, G., & de Goeij, J. M. (2021). DNA-stable isotope probing (DNA-SIP) identifies marine sponge-associated bacteria actively utilizing dissolved organic matter (DOM). Environmental Microbiology, 23(8), 4489-4504. https://doi.org/10.1111/1462-2920.15642 [details]
- Campana, S., Demey, C., Busch, K., Hentschel, U., Muijzer, G., & de Goeij, J. M. (2021). Marine sponges maintain stable bacterial communities between reef sites with different coral to algae cover ratios. FEMS Microbiology Ecology, 97(9), [fiab115]. https://doi.org/10.1093/femsec/fiab115 [details]
- Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M., & de Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: Insights into the ecological success of an early metazoan–microbe symbiosis. Microbiome, 9, [44]. https://doi.org/10.1186/s40168-020-00984-w [details]
- Piel, T., Sandrini, G., Muyzer, G., Brussaard, C. P. D., Slot, P. C., van Herk, M. J., Huisman, J., & Visser, P. M. (2021). Resilience of microbial communities after hydrogen peroxide treatment of a eutrophic lake to suppress harmful cyanobacterial blooms. Microorganisms, 9(7), [1495]. https://doi.org/10.3390/microorganisms9071495 [details]
- Sevink, J., Muijzer, G., Arienzo, I., Mormone, A., Piochi, M., Alessandri, L., van Hall, R. L., Palstra, S. W. L., & Dee, M. W. (2021). The protohistoric briquetage at Puntone (Tuscany, Italy): A multidisciplinary attempt to unravel its age and role in the salt supply of Early States in Tyrrhenian Central Italy. Journal of Archaeological Science: Reports, 38, [103055]. https://doi.org/10.1016/j.jasrep.2021.103055 [details]
2020
- Popall, R. M., Bolhuis, H., Muyzer, G., & Sánchez-Román, M. (2020). Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture. Frontiers in Microbiology, 11, [948]. https://doi.org/10.3389/fmicb.2020.00948 [details]
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I., & Popov, V. O. (2020). Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America, 117(10), 5280-5290. https://doi.org/10.1073/pnas.1922133117 [details]
- Tüccar, T., Ilhan-Sungur, E., & Muyzer, G. (2020). Bacterial community composition in produced water of Diyarbakır oil fields in Turkey Bacterial communities in produced waters of south-eastern Turkey reported in detail for the first time. Johnson Matthey Technology Review, 64(4), 452-465. https://doi.org/10.1595/205651320X15911723486216 [details]
2019
- Ahn, A-C., Cavalca, L., Colombo, M., Schuurmans, J. M., Sorokin, D. Y., & Muyzer, G. (2019). Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway. Frontiers in Microbiology, 10, [1514]. https://doi.org/10.3389/fmicb.2019.01514 [details]
- Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2019). Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads. Frontiers in Microbiology, 9, [3283]. https://doi.org/10.3389/fmicb.2018.03283 [details]
- Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2019). Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Frontiers in Microbiology, 10, [160]. https://doi.org/10.3389/fmicb.2019.00160 [details]
- Borrel, G., Adam, P. S., McKay, L. J., Chen, L-X., Sierra-García, I. N., Sieber, C. M. K., ... Gribaldo, S. (2019). Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nature Microbiology, 4(4), 603-613. https://doi.org/10.1038/s41564-019-0363-3 [details]
- Cavalca, L., Zecchin, S., Zaccheo, P., Abbas, B., Rotiroti, M., Bonomi, T., & Muyzer, G. (2019). Exploring Biodiversity and Arsenic Metabolism of Microbiota Inhabiting Arsenic-Rich Groundwaters in Northern Italy. Frontiers in Microbiology, 10, [1480]. https://doi.org/10.3389/fmicb.2019.01480 [details]
- Stouten, G. R., Hogendoorn, C., Douwenga, S., Kilias, E. S., Muyzer, G., & Kleerebezem, R. (2019). Temperature as competitive strategy determining factor in pulse-fed aerobic bioreactors. The ISME Journal, 13(12), 3112-3125. https://doi.org/10.1038/s41396-019-0495-8 [details]
- Tsallagov, S. I., Sorokin, D. Y., Tikhonova, T. V., Popov, V. O., & Muyzer, G. (2019). Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. Frontiers in Microbiology, 10, [898]. https://doi.org/10.3389/fmicb.2019.00898 [details]
- Tüccar, T., Ilhan-Sungur, E., Abbas, B., & Muyzer, G. (2019). Coexistence of sulfate reducers with the other oil bacterial groups in Diyarbakır oil fields. Anaerobe, 59, 19-31. https://doi.org/10.1016/j.anaerobe.2019.04.008 [details]
- Vavourakis, C. D., Mehrshad, M., Balkema, C., van Hall, R., Andrei, A. -Ş., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2019). Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. BMC Biology, 17, [69]. https://doi.org/10.1186/s12915-019-0688-7 [details]
2018
- Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2018). Unraveling seaweeds bacteriomes: From field site to computer screen. In B. Charrier, T. Wichard, & C. R. K. Reddy (Eds.), Protocols for Macroalgae Research (pp. 95-113). Boca Raton, FL: CRC Press. [details]
- Cúcio, C., Overmars, L., Engelen, A. H., & Muyzer, G. (2018). Metagenomic Analysis Shows the Presence of Bacteria Related to Free-Living Forms of Sulfur-Oxidizing Chemolithoautotrophic Symbionts in the Rhizosphere of the Seagrass Zostera marina. Frontiers in Marine Science, 5, [171]. https://doi.org/10.3389/fmars.2018.00171 [details]
- Diao, M., Huisman, J., & Muyzer, G. (2018). Spatio-temporal dynamics of sulfur bacteria during oxic-anoxic regime shifts in a seasonally stratified lake. FEMS Microbiology Ecology, 94(4), [fiy040]. https://doi.org/10.1093/femsec/fiy040 [details]
- Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., ... Plugge, C. M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Frontiers in Microbiology, 9, [3039]. https://doi.org/10.3389/fmicb.2018.03039 [details]
- Vavourakis, C. D., Andrei, A-S., Mehrshad, M., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2018). A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Microbiome, 6, [168]. https://doi.org/10.1186/s40168-018-0548-7 [details]
2017
- Ahn, A-C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. Y., & Muyzer, G. (2017). Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS ONE, 12(3), [e0173517]. https://doi.org/10.1371/journal.pone.0173517 [details]
- Berben, T., Balkema, C., Sorokin, D. Y., & Muyzer, G. (2017). Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics. mSystems, 2(6), [e00102-17]. https://doi.org/10.1128/mSystems.00102-17 [details]
- Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2017). Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes. Frontiers in Microbiology, 8, [254]. https://doi.org/10.3389/fmicb.2017.00254 [details]
- Bush, T., Diao, M., Allen, R. J., Sinnige, R., Muijzer, G., & Huisman, J. (2017). Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics. Nature Communications, 8, [789]. https://doi.org/10.1038/s41467-017-00912-x [details]
- Diao, M., Sinnige, R., Kalbitz, K., Huisman, J., & Muyzer, G. (2017). Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic Hypolimnion. Frontiers in Microbiology, 8, [2511]. https://doi.org/10.3389/fmicb.2017.02511 [details]
- Erol, Ö., Arends, I. W. C. E., & Muyzer, G. (2017). Discovery of Putative Halogenases in Environmental Samples Using Metagenomics. Current Biotechnology, 6(1), 17-25. https://doi.org/10.2174/2211550105666160930115934 [details]
- Ilhan-Sungur, E., Ozuolmez, D., Çotuk, A., Cansever, N., & Muyzer, G. (2017). Isolation of a sulfide-producing bacterial consortium from cooling tower water: Evaluation of corrosive effects on galvanized steel. Anaerobe, 43, 27-34. https://doi.org/10.1016/j.anaerobe.2016.11.005 [details]
- Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., ... Muyzer, G. (2017). Draft genome sequence of Dethiobacter alkaliphilus strain AHT1(T), a gram-positive sulfidogenic polyextremophile. Standards in Genomic Sciences, 12, [57]. https://doi.org/10.1186/s40793-017-0268-9 [details]
2016
- Belila, A., El-Chakhtoura, J., Otaibi, N., Muyzer, G., Gonzalez-Gil, G., Saikaly, P. E., ... Vrouwenvelder, J. S. (2016). Bacterial community structure and variation in a full-scale seawater desalination plant for drinking water production. Water Research, 94, 62-72. https://doi.org/10.1016/j.watres.2016.02.039 [details]
- Cúcio, C., Engelen, A. H., Costa, R., & Muyzer, G. (2016). Rhizosphere microbiomes of European seagrasses are selected by the plant, but are not species specific. Frontiers in Microbiology, 7, [440]. https://doi.org/10.3389/fmicb.2016.00440 [details]
- Melton, E. D., Sorokin, D. Y., Overmars, L., Chertkov, O., Clum, A., Pillay, M., ... Muyzer, G. (2016). Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Standards in Genomic Sciences, 11, [67]. https://doi.org/10.1186/s40793-016-0184-4 [details]
- Muijzer, G. (2016). Marine Microbial Systems Ecology: Microbial Networks in the Sea. In L. J. Stal, & M. S. Cretoiu (Eds.), The Marine Microbiome: An Untapped Source of Biodiversity and Biotechnological Potential (pp. 335-344). Springer. https://doi.org/10.1007/978-3-319-33000-6_12 [details]
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D. Y., Tringe, S. G., Hugenholtz, P., & Muyzer, G. (2016). Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Frontiers in Microbiology, 7, [211]. https://doi.org/10.3389/fmicb.2016.00211 [details]
2015
- Bassin, J. P., Abbas, B., Vilela, C. L. S., Kleerebezem, R., Muyzer, G., Rosado, A. S., ... Dezotti, M. (2015). Tracking the dynamics of heterotrophs and nitrifiers in moving-bed biofilm reactors operated at different COD/N ratios. Bioresource Technology, 192, 131-141. https://doi.org/10.1016/j.biortech.2015.05.051 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. Standards in Genomic Sciences, 10, [105]. https://doi.org/10.1186/s40793-015-0097-7 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification. Standards in Genomic Sciences, 10, [84]. https://doi.org/10.1186/s40793-015-0080-3 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., ... Muyzer, G. (2015). Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T. Standards in Genomic Sciences, 10, [85]. https://doi.org/10.1186/s40793-015-0078-x [details]
- Corsini, A., Colombo, M., Muyzer, G., & Cavalca, L. (2015). Characterization of the arsenite oxidizer Aliihoeflea sp. strain 2WW and its potential application in the removal of arsenic from groundwater in combination with Pf-ferritin. Antonie van Leeuwenhoek, 108(3), 673-684. https://doi.org/10.1007/s10482-015-0523-2 [details]
- Muntyan, M. S., Cherepanov, D. A., Malinen, A. M., Bloch, D. A., Sorokin, D. Y., Severina, I. I., ... Skulachev, V. P. (2015). Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase. Proceedings of the National Academy of Sciences of the United States of America, 112(25), 7695-7700. https://doi.org/10.1073/pnas.1417071112 [details]
- Sorokin, D. Y., Banciu, H. L., & Muyzer, G. (2015). Functional microbiology of soda lakes. Current opinion in microbiology, 25, 88-96. https://doi.org/10.1016/j.mib.2015.05.004 [details]
2014
- Corsini, A., Cavalca, L., Muyzer, G., & Zaccheo, P. (2014). Effectiveness of various sorbents and biological oxidation in the removal of arsenic species from groundwater. Environmental Chemistry, 11(5), 558-565. https://doi.org/10.1071/EN13210 [details]
- Corsini, A., Zaccheo, P., Muyzer, G., Andreoni, V., & Cavalca, L. (2014). Arsenic transforming abilities of groundwater bacteria and the combined use of Aliihoeflea sp. strain 2WW and goethite in metalloid removal. Journal of Hazardous Materials, 269, 89-97. https://doi.org/10.1016/j.jhazmat.2013.12.037 [details]
- Kuever, J., Visser, M., Loeffler, C., Boll, M., Worm, P., Sousa, D. Z., ... Stams, A. J. M. (2014). Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium. Standards in Genomic Sciences, 9(3), 821-839. https://doi.org/10.4056/sigs.5209235 [details]
- Marty, F., Gueuné, H., Malard, E., Sánchez-Amaya, J. M., Sjögren, L., Abbas, B., ... Muyzer, G. (2014). Identification of key factors in Accelerated Low Water Corrosion through experimental simulation of tidal conditions: influence of stimulated indigenous microbiota. BIOFOULING, 30(3), 281-297. https://doi.org/10.1080/08927014.2013.864758 [details]
- Marty, F., van Loosdrecht, M., & Muyzer, G. (2014). Molecular Characterization of Microbial Communities Associated with Accelerated Low-water Corrosion (ALWC) on European Harbour Structures. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 55-67). Norfolk: Caister Academic Press. [details]
- Muyzer, G., & Marty, F. (2014). Molecular Methods in Microbiologically Influenced Corrosion Research, Monitoring and Control. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 7-22). Norfolk: Caister Academic Press. [details]
- Oueriaghli, N., González-Domenech, C. M., Martínez-Checa, F., Muyzer, G., Ventosa, A., Quesada, E., & Béjar, V. (2014). Diversity and distribution of Halomonas in Rambla Salada, a hypersaline environment in the southeast of Spain. FEMS Microbiology Ecology, 87(2), 460-474. https://doi.org/10.1111/1574-6941.12237 [details]
- Sandrini, G., Matthijs, H. C. P., Verspagen, J. M. H., Muyzer, G., & Huisman, J. (2014). Genetic diversity of inorganic carbon uptake systems causes variation in CO2 response of the cyanobacterium Microcystis. The ISME Journal, 8, 589-600. https://doi.org/10.1038/ismej.2013.179 [details]
- Sorokin, D. Y., Abbas, B., Tourova, T. P., Bumazhkin, B. K., Kolganova, T. V., & Muyzer, G. (2014). Sulfate-dependent acetate oxidation under extremely natron-alkaline conditions by syntrophic associations from hypersaline soda lakes. Microbiology, 160(4), 723-732. https://doi.org/10.1099/mic.0.075093-0 [details]
- Sorokin, D. Y., Berben, T., Melton, E. D., Overmars, L., Vavourakis, C. D., & Muyzer, G. (2014). Microbial diversity and biogeochemical cycling in soda lakes. Extremophiles, 18(5), 791-809. https://doi.org/10.1007/s00792-014-0670-9 [details]
- Sorokin, D. Y., Gumerov, V. M., Rakitin, A. L., Beletsky, A. V., Sinninghe Damsté, J. S., Muyzer, G., ... Ravin, N. V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environmental Microbiology, 16(6), 1549-1565. https://doi.org/10.1111/1462-2920.12284 [details]
- Sorokin, D. Y., Vejmelkova, D., Lücker, S., Streshinskaya, G. M., Rijpstra, W. I. C., Sinninghe Damste, J. S., ... Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. International Journal of Systematic and Evolutionary Microbiology, 64(6), 1859-1865. https://doi.org/10.1099/ijs.0.062232-0 [details]
- Suzuki, S., Kuenen, J. G., Schipper, K., van der Velde, S., Ishii, S., Wu, A., ... Nealson, K. H. (2014). Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site. Nature Communications, 5, 3900. https://doi.org/10.1038/ncomms4900 [details]
- Visser, M., Parshina, S. N., Alves, J. I., Sousa, D. Z., Pereira, I. A. C., Muyzer, G., ... Stams, A. J. M. (2014). Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans. Standards in Genomic Sciences, 9(3), 655-675. https://doi.org/10.4056/sigs.4718645 [details]
2013
- Belila, A., Abbas, B., Fazaa, I., Saidi, N., Snoussi, M., Hassen, A., & Muyzer, G. (2013). Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon. Applied Microbiology and Biotechnology, 97(1), 379-394. https://doi.org/10.1007/s00253-012-3931-5 [details]
- Besaury, L., Marty, F., Buquet, S., Mesnage, V., Muijzer, G., & Quillet, L. (2013). Culture-Dependent and Independent Studies of Microbial Diversity in Highly Copper-Contaminated Chilean Marine Sediments. Microbial Ecology, 65(2), 311-324. https://doi.org/10.1007/s00248-012-0120-0 [details]
- Cavalca, L., Corsini, A., Andreoni, V., & Muyzer, G. (2013). Draft genome sequence of the arsenite-oxidizing strain Aliihoeflea sp. 2WW, isolated from arsenic-contaminated groundwater. Genome Announcements, 1(6), e1072-13. https://doi.org/10.1128/genomeA.01072-13 [details]
- Cavalca, L., Corsini, A., Zaccheo, P., Andreoni, V., & Muyzer, G. (2013). Microbial transformations of arsenic: perspectives for biological removal of arsenic from water. Future Microbiology, 8(6), 753-768. https://doi.org/10.2217/FMB.13.38 [details]
- Chen, B. S., Otten, L. G., Resch, V., Muyzer, G., & Hanefeld, U. (2013). Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. Standards in Genomic Sciences, 9(1), 175-184. https://doi.org/10.4056/sigs.4418165 [details]
- Muyzer, G., Kuenen, J. G., & Robertson, L. A. (2013). Colorless Sulfur Bacteria. In E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes: Prokaryotic Physiology and Biochemistry (pp. 555-588). Springer. https://doi.org/10.1007/978-3-642-30141-4_78 [details]
- Païssé, S., Ghiglione, J-F., Marty, F., Abbas, B., Gueuné, H., Sanchez Amaya, J., ... Quillet, L. (2013). Sulfate-reducing bacteria inhabiting natural corrosion depostis from marine steel structures. Applied Microbiology and Biotechnology, 97(16), 7493-7504. https://doi.org/10.1007/s00253-012-4464-7 [details]
- Sorokin, D. Y., Banciu, H., Robertson, L. A., Kuenen, J. G., Muntyan, M. S., & Muyzer, G. (2013). Halophilic and haloalkaliphilic sulfur-oxidizing bacteria. In E. Rosenberg, F. DeLong, E. Delong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes : Prokaryotic Physiology and Biochemistry (pp. 529-554). Springer. https://doi.org/10.1007/978-3-642-30141-4_77 [details]
- Sorokin, D. Y., Tourova, T. P., & Muyzer, G. (2013). Isolation and characterization of two novel alkalitolerant sulfidogens from a Thiopaq bioreactor, Desulfonatronum alkalitolerans sp. nov., and Sulfurospirillum alkalitolerans sp. nov. Extremophiles, 17(3), 535-543. https://doi.org/10.1007/s00792-013-0538-4 [details]
- Tourova, T. P., Slobodova, N. V., Bumazhkin, B. K., Kolganova, T. V., Muijzer, G., & Sorokin, D. Y. (2013). Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes using soxB as a functional molecular marker. FEMS Microbiology Ecology, 84(2), 280-289. https://doi.org/10.1111/1574-6941.12056 [details]
- Visser, M., Worm, P., Muyzer, G., Pereira, I. A. C., Schaap, P. J., Plugge, C. M., ... Stams, A. J. M. (2013). Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT. Standards in Genomic Sciences, 8(1), 69-87. https://doi.org/10.4056/sigs.3627141 [details]
- Vissers, E. W., Anselmetti, F. S., Bodelier, P. L. E., Muyzer, G., Schleper, C., Tourna, M., & Laanbroek, H. J. (2013). Temporal and spatial coexistence of archaeal and bacterial amoA genes and gen transcripts in Lake Lucerne. Archaea, 2013, 289478. https://doi.org/10.1155/2013/289478 [details]
- Vissers, E. W., Blaga, C. I., Bodelier, P. L. E., Muyzer, G., Schleper, C., Sinninghe Damsté, J. S., ... Laanbroek, H. J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiology Ecology, 83(2), 515-526. https://doi.org/10.1111/1574-6941.12013 [details]
2012
- Marty, F., Ghiglione, J-F., Païssé, S., Gueuné, H., Quillet, L., van Loosdrecht, M. C. M., & Muyzer, G. (2012). Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corrored steel. BIOFOULING, 28(4), 363-380. https://doi.org/10.1080/08927014.2012.672644 [details]
- Sorokin, D. Y., Lücker, S., Vejmelkova, D., Kostrikina, N. A., Kleerebezem, R., Rijpstra, W. I. C., ... Daims, H. (2012). Nitrification expanded: discovery, physiology, and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexii. The ISME Journal, 6(12), 2245-2256. https://doi.org/10.1038/ismej.2012.70 [details]
- Sorokin, D. Y., Muntyan, M. S., Panteleeva, A. N., & Muyzer, G. (2012). Thioalkalivibrio sulfidophilus sp. nov., a haloalkaliphilic sulfur-oxidizing gammaproteobacterium from alklaine habitats. International Journal of Systematic and Evolutionary Microbiology, 62(8), 1884-1889. https://doi.org/10.1099/ijs.0.034504-0 [details]
- Sorokin, D. Y., Tourova, T. P., Abbas, B., Suhacheva, M. V., & Muyzer, G. (2012). Desulfonatronovibrio halophilus sp. nov., a novel moderately halophilic sulfate-reducing bacterium from hypersaline chloride-sulfate lakes in Central Asia. Extremophiles, 16(3), 411-417. https://doi.org/10.1007/s00792-012-0440-5 [details]
- Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Desulfonatronobacter acidivorans gen. nov., sp. nov., and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes. International Journal of Systematic and Evolutionary Microbiology, 62(9), 2107-2113. https://doi.org/10.1099/ijs.0.029777-0 [details]
- Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., Kaparullina, E. N., & Muyzer, G. (2012). Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes. Extremophiles, 16(2), 307-315. https://doi.org/10.1007/s00792-012-0431-6 [details]
- Sorokin, D. Y., Tourova, T. P., Sukhacheva, M. V., & Muyzer, G. (2012). Desulfuribacillus alkaliarsenatis gen. nov., sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes. Extremophiles, 16(4), 597-605. https://doi.org/10.1007/s00792-012-0459-7 [details]
- Sorokin, D. Y., Zacharova, E. E., Pimenov, N. V., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Sulfidogenesis in hypersaline chloride-sulfate lakes of Kulunda Steppe (Altai, Russia). FEMS Microbiology Ecology, 79(2), 445-453. https://doi.org/10.1111/j.1574-6941.2011.01228.x [details]
- Vejmelkova, D., Sorokin, D. Y., Abbas, B., Kovaleva, O. L., Kleerebezem, R., Kampschreur, M. J., ... van Loosdrecht, M. C. M. (2012). Analysis of ammonia-oxidizing bacteria dominating in lab-scale bioreactors with high ammonium bicarbonate loading. Applied Microbiology and Biotechnology, 93(1), 401-410. https://doi.org/10.1007/s00253-011-3409-x [details]
- Wang, J., Krause, S., Muyzer, G., Meima-Franke, M., Laanbroek, H. J., & Bodelier, P. L. E. (2012). Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland. Frontiers in Microbiology, 3, 64. [64]. https://doi.org/10.3389/fmicb.2012.00064 [details]
- de Graaff, M., Klok, J. B. M., Bijmans, M. F. M., Muyzer, G., & Janssen, A. J. H. (2012). Application of a 2-step process for the biological treatment of sulfidic spent caustics. Water Research, 46(3), 723-730. https://doi.org/10.1016/j.watres.2011.11.044 [details]
2011
- Bassin, J. P., Pronk, M., Muijzer, G., Kleerebezem, R., Dezotti, M., & van Loosdrecht, M. C. M. (2011). Effect of elevated salt concentrations on the aerobic granular sludge process: linking microbial activity with microbial community structure. Applied and Environmental Microbiology, 77(22), 7942-7953. https://doi.org/10.1128/AEM.05016-11
- Jiang, Y., Hebly, M., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Metabolic modeling of mixed substrate uptake for polyhydroxyalkanoate (PHA) production. Water Research, 45(3), 1309-1321. https://doi.org/10.1016/j.watres.2010.10.009 [details]
- Jiang, Y., Marang, L., Kleerebezem, R., Muijzer, G., & van Loosdrecht, M. C. M. (2011). Polyhydroxybutyrate production from lactate using a mixed microbial culture. Biotechnology and Bioengineering, 108(9), 2022-2035. https://doi.org/10.1002/bit.23148 [details]
- Jiang, Y., Marang, L., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Effect of temperature and cycle length on microbial competition in PHB-producing sequencing batch reactor. The ISME Journal, 5(5), 896-907. https://doi.org/10.1038/ismej.2010.174 [details]
- Jiang, Y., Sorokin, D. Y., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. (2011). Plasticicumulans acidivorans gen. nov., sp nov., a polyhydroxyalkanoate-accumulating gammaproteobacterium from a sequencing-batch bioreactor. International Journal of Systematic and Evolutionary Microbiology, 61(9), 2314-2319. https://doi.org/10.1099/ijs.0.021410-0 [details]
- Kovaleva, O. L., Tourova, T. P., Muyzer, G., Kolganova, T. V., & Sorokin, D. Y. (2011). Diversity of RuBisCO and ATP citrate lyase genes in soda lake sediments. FEMS Microbiology Ecology, 75(1), 37-47. https://doi.org/10.1111/j.1574-6941.2010.00996.x [details]
- Muijzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Foster, B., Sun, H., ... Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sp. K90mix. Standards in Genomic Sciences, 5(3), 341-355. https://doi.org/10.4056/sigs.2315092 [details]
- Muyzer, G., & Sorokin, D. Y. (2011). Molecular mechanisms of adaptation to pH stress in microorganisms. In S. Casella (Ed.), Microbial diversity 2011: environmental stress and adaptation., MD 2011: proceedings of the First International Conference on Micro Diversity 2011 - environmental stress and adaption, MD 2011, 26 - 28 October 2011, Milan, Italy (pp. 27-32). San Casciano Val di Pesa, Firenze: Società Italiana di Microbiologia Agro-Alimentare e Ambientale. [details]
- Muyzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Clum, A., Ivanova, N., ... Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7. Standards in Genomic Sciences, 4(1), 23-35. https://doi.org/10.4056/sigs.1483693 [details]
- Sorokin, D. Y., Detkova, E. N., & Muijzer, G. (2011). Sulfur-dependent respiration under extremely haloalkaline conditions in soda lake ‘acetogens’ and the description of Natroniella sulfidigena sp. nov. FEMS Microbiology Letters, 319(1), 88-95. https://doi.org/10.1111/j.1574-6968.2011.02272.x [details]
- Sorokin, D. Y., Kuenen, J. G., & Muijzer, G. (2011). The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Frontiers in Microbiology, 2, [44]. https://doi.org/10.3389/fmicb.2011.00044 [details]
- Sorokin, D. Y., Panteleeva, A. N., Tourova, T. P., Kaparullina, E. N., & Muijzer, G. (2011). Natronoflexus pectinivorans gen. nov. sp. nov., an obligately anaerobic and alkaliphilic fermentative member of Bacteroidetes from soda lakes. Extremophiles, 15(6), 691-696. https://doi.org/10.1007/s00792-011-0399-7 [details]
- Sorokin, D. Y., Tourova, T. P., Kolganova, T. V., Detkova, E. N., Galinski, E. A., & Muyzer, G. (2011). Culturable diversity of lithotrophic haloalkaliphilic sulfate-reducing bacteria in soda lakes and the description of Desulfonatronum thioautotrophicum sp. nov., Desulfonatronum thiosulfatophilum sp. nov., Desulfonatronovibrio thiodismutans sp. nov., and Desulfonatronovibrio magnus sp. nov. Extremophiles, 15(3), 391-401. https://doi.org/10.1007/s00792-011-0370-7 [details]
- Wang, J., Vollrath, S., Behrends, T., Bodelier, P. L. E., Muyzer, G., Meima-Franke, M., ... Laanbroek, H. J. (2011). Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh. Applied and Environmental Microbiology, 77(7), 2337-2344. https://doi.org/10.1128/AEM.02448-10 [details]
- de Graaff, M., Bijmans, M. F. M., Abbas, B., Euverink, G. J. W., Muijzer, G., & Janssen, A. J. H. (2011). Biological treatment of refinery spent caustics under halo-alkaline conditions. Bioresource Technology, 102(15), 7257-7264. https://doi.org/10.1016/j.biortech.2011.04.095 [details]
2009
- Vanelslander, B., Créach, V., Vanormelingen, P., Ernst, A., Chepurnov, V. A., Sahan, E., ... Sabbe, K. (2009). Ecological differentiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae). Journal of phycology, 45(6), 1278-1289. https://doi.org/10.1111/j.1529-8817.2009.00762.x [details]
2016
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). The discovery of Nanohaloarchaea in metagenomes of Siberian hypersaline soda brines.
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). “Nanohaloarchaea” Population Genomes In Metagenomes From Siberian Hypersaline Soda Brines.
Prize / grant
- Muyzer, G. (2013). ERC Advanced Grant PARASOL.
2022
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251762.v1
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251756.v1
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.c.6225476.v1
2021
- Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M. & De Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan–microbe symbiosis. DRYAD. https://doi.org/10.5061/dryad.6hdr7sr0n
2019
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.3. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169112.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.1. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168296.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.4. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169232.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168761.v1
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Ancillary activities
- No ancillary activities
Bai, X., Dinkla, I. J. T., & Muyzer, G. (2022). Microbial ecology of biofiltration used for producing safe drinking water. Applied Microbiology and Biotechnology, 106(13-16), 4813-4829.