Prof. dr. M.J.A. (Mark) Vermeij
Professor of Tropical Marine Ecology
Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
- Science Park 904
Postal address
-
Postbus 94240
1090 GE Amsterdam
Contact details
-
Publications
2024
Hernández-Agreda, A., Huckeba, J., Prata, K. E., Vermeij, M. J. A., & Bongaerts, P. (2024). Hybridization and inbreeding affect the survival of a critically endangered coral. Current Biology, 34(21), 5120-5129.e4. https://doi.org/10.1016/j.cub.2024.09.035 [details]- Hoeksema, B. W., Samimi-Namin, K., & Vermeij, M. J. A. (2024). Neutral interactions among three nonindigenous coral species in a tropical marine fouling community. Ecology, 105(8), Article e4371. https://doi.org/10.1002/ecy.4371
- Latijnhouwers, K. R. W., van Aalst, M., Huckeba, J., Miller, M. W., Vermeij, M. J. A., & Chamberland, V. F. (2024). The sea urchin Diadema antillarum facilitates recruitment of the Critically Endangered Caribbean coral species Acropora palmata. Marine Ecology Progress Series, 746, 35-48. https://doi.org/10.3354/meps14681 [details]
- Varona, N. S., Hesketh-Best, P. J., Coutinho, F. H., Stiffler, A. K., Wallace, B. A., Garcia, S. L., Scholten, Y., Haas, A. F., Little, M., Vermeij, M., Luque, A., & Silveira, C. (2024). Host-specific viral predation network on coral reefs. The ISME Journal, 18(1), Article wrae240. https://doi.org/10.1093/ismejo/wrae240
- van Duyl, F. C., Post, V. E. A., van Breukelen, B. M., Bense, V., Visser, P. M., Meesters, E. H., Koeniger, P., & Vermeij, M. J. A. (2024). Composition and distribution of the near-shore waters bordering the coral reefs of Aruba, Bonaire, and Curaçao in the Southern Caribbean. Marine Pollution Bulletin, 209(Part B), Article 117297. https://doi.org/10.1016/j.marpolbul.2024.117297 [details]
2023
- Candy, A. S., Taylor Parkins, S. K., Van Duyl, F. C., Mueller, B., Arts, M. G. I., Barnes, W., Carstensen, M., Scholten, Y. J. H., El-Khaled, Y. C., Wild, C., Wegley Kelly, L., Nelson, C. E., Sandin, S. A., Vermeij, M. J. A., Rohwer, F. L., Picioreanu, C., Stocchi, P., & Haas, A. F. (2023). Small-scale oxygen distribution patterns in a coral reef. Frontiers in Marine Science, 10, Article 1135686. https://doi.org/10.3389/fmars.2023.1135686 [details]
- Eckmann, C., Eberle, J., Wittmers, F., Wilken, S., Bergauer, K., Poirier, C., Blum, M., Makareviciute-Fichtner, K., Jimenez, V., Bachy, C., Vermeij, M. J. A., & Worden, A. Z. (2023). Eukaryotic algal community composition in tropical environments from solar salterns to the open sea. Frontiers in Marine Science, 10, Article 1131351. https://doi.org/10.3389/fmars.2023.1131351
- Gijsbers, J. C., Englebert, N., Prata, K. E., Pichon, M., Dinesen, Z., Brunner, R., Eyal, G., González-Zapata, F. L., Kahng, S. E., Latijnhouwers, K. R. W., Muir, P., Radice, V. Z., Sánchez, J. A., Vermeij, M. J. A., Hoegh-Guldberg, O., Jacobs, S. J., & Bongaerts, P. (2023). Global phylogenomic assessment of Leptoseris and Agaricia reveals substantial undescribed diversity at mesophotic depths. BMC Biology, 21, Article 147. https://doi.org/10.1186/s12915-023-01630-1
- Hill, R. W., Florn, A. M., Vermeij, M. J. A., & Frade, P. R. (2023). In situ testing of candidate odorant cues in coral-reef fish: a new method with tests of dimethylsulfoniopropionate and betaines. Frontiers in Marine Science, 10, Article 1187249. https://doi.org/10.3389/fmars.2023.1187249
- Hoeksema, B. W., Samimi-Namin, K., McFadden, C. S., Rocha, R. M., van Ofwegen, L. P., Hiemstra, A. F., & Vermeij, M. J. A. (2023). Non-native coral species dominate the fouling community on a semi-submersible platform in the southern Caribbean. Marine Pollution Bulletin, 194, Article 115354. https://doi.org/10.1016/j.marpolbul.2023.115354
2022
- Kornder, N. A., Esser, Y., Stoupin, D., Leys, S. P., Mueller, B., Vermeij, M. J. A., Huisman, J., & de Goeij, J. M. (2022). Sponges sneeze mucus to shed particulate waste from their seawater inlet pores. Current Biology, 32(17), 3855-3861.e3. Advance online publication. https://doi.org/10.1016/j.cub.2022.07.017 [details]
- Levenstein, M. A., Gysbers, D. J., Marhaver, K. L., Kattom, S., Tichy, L., Quinlan, Z., Tholen, H. M., Wegley Kelly, L., Vermeij, M. J. A., Wagoner Johnson, A. J., & Juarez, G. (2022). Millimeter-scale topography facilitates coral larval settlement in wave-driven oscillatory flow. PLoS ONE, 17(9), Article e0274088. https://doi.org/10.1371/journal.pone.0274088 [details]
- Levenstein, M. A., Marhaver, K. L., Quinlan, Z. A., Tholen, H. M., Tichy, L., Yus, J., Lightcap, I., Wegley Kelly, L., Juarez, G., Vermeij, M. J. A., & Wagoner Johnson, A. J. (2022). Composite Substrates Reveal Inorganic Material Cues for Coral Larval Settlement. ACS Sustainable Chemistry and Engineering, 10(12), 3960-3971. https://doi.org/10.1021/acssuschemeng.1c08313 [details]
- Mueller, B., Brocke, H. J., Rohwer, F. L., Dittmar, T., Huisman, J., Vermeij, M. J. A., & de Goeij, J. M. (2022). Nocturnal dissolved organic matter release by turf algae and its role in the microbialization of reefs. Functional Ecology, 36(8), 2104-2118. https://doi.org/10.1111/1365-2435.14101 [details]
- Polanco F., A., Waldock, C., Keggin, T., Marques, V., Rozanski, R., Valentini, A., Dejean, T., Manel, S., Vermeij, M., Albouy, C., & Pellissier, L. (2022). Ecological indices from environmental DNA to contrast coastal reefs under different anthropogenic pressures. Ecology and Evolution, 12(8), Article e9212. https://doi.org/10.1002/ece3.9212 [details]
- Sandin, S. A., Alcantar, E., Clark, R., de León, R., Dilrosun, F., Edwards, C. B., Estep, A. J., Eynaud, Y., French, B. J., Fox, M. D., Grenda, D., Hamilton, S. L., Kramp, H., Marhaver, K. L., Miller, S. D., Roach, T. N. F., Seferina, G., Silveira, C. B., Smith, J. E., ... Vermeij, M. J. A. (2022). Benthic assemblages are more predictable than fish assemblages at an island scale. Coral reefs, 41(4), 1031-1043. https://doi.org/10.1007/s00338-022-02272-5 [details]
- Vasquez Kuntz, K. L., Kitchen, S. A., Conn, T. L., Vohsen, S. A., Chan, A. N., Vermeij, M. J. A., Page, C., Marhaver, K. L., & Baums, I. B. (2022). Inheritance of somatic mutations by animal offspring. Science Advances, 8(35), Article eabn0707. https://doi.org/10.1126/sciadv.abn0707 [details]
2021
- George, E. E., Mullinix, J. A., Meng, F., Bailey, B. A., Edwards, C., Felts, B., Haas, A. F., Hartmann, A. C., Mueller, B., Roach, T. N. F., Salamon, P., Silveira, C., Vermeij, M. J. A., Rohwer, F., & Luque, A. (2021). Space-filling and benthic competition on coral reefs. PeerJ, 9, Article e11213. https://doi.org/10.7717/peerj.11213 [details]
- Hagedorn, M., Page, C. A., O'Neil, K. L., Flores, D. M., Tichy, L., Conn, T., Chamberland, V. F., Lager, C., Zuchowicz, N., Lohr, K., Blackburn, H., Vardi, T., Moore, J., Moore, T., Baums, I. B., Vermeij, M. J. A., & Marhaver, K. L. (2021). Assisted gene flow using cryopreserved sperm in critically endangered coral. Proceedings of the National Academy of Sciences of the United States of America, 118(38), Article e2110559118. https://doi.org/10.1073/pnas.2110559118 [details]
- Kornder, N. A., Cappelletto, J., Mueller, B., Zalm, M. J. L., Martinez, S. J., Vermeij, M. J. A., Huisman, J., & de Goeij, J. M. (2021). Implications of 2D versus 3D surveys to measure the abundance and composition of benthic coral reef communities. Coral reefs, 40(4), 1137-1153. https://doi.org/10.1007/s00338-021-02118-6 [details]
- Kwong, W. K., Irwin, N. A. T., Mathur, V., Na, I., Okamoto, N., Vermeij, M. J. A., & Keeling, P. J. (2021). Taxonomy of the Apicomplexan Symbionts of Coral, including Corallicolida ord. nov., Reassignment of the Genus Gemmocystis, and Description of New Species Corallicola aquarius gen. nov. sp. nov. and Anthozoaphila gnarlus gen. nov. sp. nov. Journal of Eukaryotic Microbiology, 68(4), Article e12852. https://doi.org/10.1111/jeu.12852 [details]
- Little, M., George, E. E., Arts, M. G. I., Shivak, J., Benler, S., Huckeba, J., Quinlan, Z. A., Boscaro, V., Mueller, B., Güemes, A. G. C., Rojas, M. I., White, B., Petras, D., Silveira, C. B., Haas, A. F., Kelly, L. W., Vermeij, M. J. A., Quinn, R. A., Keeling, P. J., ... Roach, T. N. F. (2021). Three-Dimensional Molecular Cartography of the Caribbean Reef-Building Coral Orbicella faveolata. Frontiers in Marine Science, 8, Article 627724. https://doi.org/10.3389/fmars.2021.627724 [details]
2020
- Roach, T. N. F., Little, M., Arts, M. G. I., Huckeba, J., Haas, A. F., George, E. E., Quinn, R. A., Cobián-Güemes, A. G., Naliboff, D. S., Silveira, C. B., Vermeij, M. J. A., Kelly, L. W., Dorrestein, P. C., & Rohwer, F. (2020). A multiomic analysis of in situ coral-turf algal interactions. Proceedings of the National Academy of Sciences of the United States of America, 117(24), 13588-13595. https://doi.org/10.1073/pnas.1915455117 [details]
2019
- Brito-Millán, M., Vermeij, M. J. A., Alcantar, E. A., & Sandin, S. A. (2019). Coral reef assessments based on cover alone mask active dynamics of coral communities. Marine Ecology Progress Series, 630, 55-68. https://doi.org/10.3354/meps13128 [details]
- Brunet, T., Larson, B. T., Linden, T. A., Vermeij, M. J. A., McDonald, K., & King, N. (2019). Light-regulated collective contractility in a multicellular choanoflagellate. Science (New York, N.Y.), 366(6463), 326-334. https://doi.org/10.1126/science.aay2346 [details]
- Frade, P. R., Bongaerts, P., Baldwin, C. C., Trembanis, A. C., Bak, R. P. M., & Vermeij, M. J. A. (2019). Bonaire and Curaçao. In Y. Loya, K. A. Puglise, & T. C. L. Bridge (Eds.), Mesophotic Coral Ecosystems (pp. 149-162 ). (Coral Reefs of the World; Vol. 12). Springer. https://doi.org/10.1007/978-3-319-92735-0 [details]
- Hartmann, A. C., Marhaver, K. L., Klueter, A., Lovci, M. T., Closek, C. J., Diaz, E., Chamberland, V. F., Archer, F. I., Deheyn, D. D., Vermeij, M. J. A., & Medina, M. (2019). Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host. Molecular Ecology, 28(1), 141-155. https://doi.org/10.1111/mec.14967 [details]
- Hoeksema, B. W., Hiemstra, A-F., & Vermeij, M. J. A. (2019). The rise of a native sun coral species on southern Caribbean coral reefs. Ecosphere, 10(11), Article e02942. https://doi.org/10.1002/ecs2.2942 [details]
- Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., Edwards, R. A., Fox, M. D., Hatay, M., Johnson, M. D., Kelly, E. L. A., Lim, Y. W., Macherla, S., Quinlan, Z. A., Silva, G. G. Z., Vermeij, M. J. A., Zgliczynski, B., Sandin, S. A., Smith, J. E., & Rohwer, F. (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications, 10, Article 1691. https://doi.org/10.1038/s41467-019-09419-z [details]
- Kwong, W. K., del Campo, J., Mathur, V., Vermeij, M. J. A., & Keeling, P. J. (2019). A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes. Nature, 568(7750), 103-107. https://doi.org/10.1038/s41586-019-1072-z [details]
- Linden, B., Vermeij, M. J. A., & Rinkevich, B. (2019). The coral settlement box: A simple device to produce coral stock from brooded coral larvae entirely in situ. Ecological Engineering, 132, 115-119. https://doi.org/10.1016/j.ecoleng.2019.04.012 [details]
- Silveira, C. B., Luque, A., Roach, T. N. F., Villela, H., Barno, A., Green, K., Reyes, B., Rubio-Portillo, E., Le, T., Mead, S., Hatay, M., Vermeij, M. J. A., Takeshita, Y., Haas, A., Bailey, B., & Rohwer, F. (2019). Biophysical and physiological processes causing oxygen loss from coral reefs. eLife, 8, Article e49114. https://doi.org/10.7554/eLife.49114 [details]
- Vermeij, M. J. A., Latijnhouwers, K. R. W., Dilrosun, F., Chamberland, V. F., Dubé, C. E., Van Buurt, G., & Debrot, A. O. (2019). Historical changes (1905-present) in catch size and composition reflect altering fisheries practices on a small Caribbean island. PLoS ONE, 14(6), Article e0217589. https://doi.org/10.1371/journal.pone.0217589 [details]
- Votýpka, J., Kment, P., Kriegová, E., Vermeij, M. J. A., Keeling, P. J., Yurchenko, V., & Lukeš, J. (2019). High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island. Journal of Eukaryotic Microbiology, 66(4), 600-607. https://doi.org/10.1111/jeu.12704 [details]
- del Campo, J., Pons, M. J., Herranz, M., Wakeman, K. C., del Valle, J., Vermeij, M. J. A., Leander, B. S., & Keeling, P. J. (2019). Validation of a universal set of primers to study animal-associated microeukaryotic communities. Environmental Microbiology, 21(10), 3855-3861. https://doi.org/10.1111/1462-2920.14733 [details]
2018
- Engelen, A. H., Aires, T., Vermeij, M. J. A., Herndl, G. J., Serrão, E. A., & Frade, P. R. (2018). Host Differentiation and Compartmentalization of Microbial Communities in the Azooxanthellate Cupcorals Tubastrea coccinea and Rhizopsammia goesi in the Caribbean. Frontiers in Marine Science, 5, Article 391. https://doi.org/10.3389/fmars.2018.00391 [details]
- Hartmann, A. C., Marhaver, K. L., & Vermeij, M. J. A. (2018). Corals in healthy populations produce more larvae per unit cover. Conservation Letters, 11(3), Article e12410. https://doi.org/10.1111/conl.12410 [details]
- Ruttenberg, B., Caselle, J. E., Estep, A. J., Johnson, A. E., Marhaver, K. L., Richter, L. J., Sandin, S. A., Vermeij, M. J. A., Smith, J. E., Grenda, D., & Cannon, A. (2018). Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management. PLoS ONE, 13(1), Article e0189355. https://doi.org/10.1371/journal.pone.0189355 [details]
2017
- Andradi-Brown, D. A., Vermeij, M. J. A., Slattery, M., Lesser, M., Bejarano, I., Appeldoorn, R., Goodbody-Gringley, G., Chequer, A. D., Pitt, J. M., Eddy, C., Smith, S. R., Brokovich, E., Pinheiro, H. T., Jessup, M. E., Shepherd, B., Rocha, L. A., Curtis-Quick, J., Eyal, G., Noyes, T. J., ... Exton, D. A. (2017). Large-scale invasion of western Atlantic mesophotic reefs by lionfish potentially undermines culling-based management. Biological Invasions, 19(3), 939-954. Advance online publication. https://doi.org/10.1007/s10530-016-1358-0 [details]
- Chamberland, V. F., Latijnhouwers, K. R. W., Huisman, J., Hartmann, A. C., & Vermeij, M. J. A. (2017). Costs and benefits of maternally inherited algal symbionts in coral larvae. Proceedings of the Royal Society B-Biological Sciences, 284(1857), Article 0852. https://doi.org/10.1098/rspb.2017.0852 [details]
- Chamberland, V. F., Petersen, D., Guest, J. R., Petersen, U., Brittsan, M., & Vermeij, M. J. A. (2017). New Seeding Approach Reduces Costs and Time to Outplant Sexually Propagated Corals for Reef Restoration. Scientific Reports, 7, Article 18076. https://doi.org/10.1038/s41598-017-17555-z [details]
- Chamberland, V. F., Snowden, S., Marhaver, K. L., Petersen, D., & Vermeij, M. J. A. (2017). The reproductive biology and early life ecology of a common Caribbean brain coral, Diploria labyrinthiformis (Scleractinia: Faviinae). Coral reefs, 36(1), 83-94. https://doi.org/10.1007/s00338-016-1504-2 [details]
- Dubé, C. E., Mercière, A., Vermeij, M. J. A., & Planes, S. (2017). Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia. PLoS ONE, 12(3), Article e0173513 . https://doi.org/10.1371/journal.pone.0173513 [details]
- Hartmann, A. C., Petras, D., Quinn, R. A., Protsyuk, I., Archer, F. I., Ransome, E., Williams, G. J., Bailey, B. A., Vermeij, M. J. A., Alexandrov, T., Dorrestein, P. C., & Rohwer, F. L. (2017). Meta-mass shift chemical profiling of metabolomes from coral reefs. Proceedings of the National Academy of Sciences of the United States of America, 114(44), 11685-11690. Advance online publication. https://doi.org/10.1073/pnas.1710248114 [details]
- Potkamp, G., Vermeij, M. J. A., & Hoeksema, B. W. (2017). Genetic and morphological variation in corallivorous snails (Coralliophila spp.) living on different host corals at Curacao, southern Caribbean. Contributions to Zoology, 86(2), 111-144. http://www.ctoz.nl/vol86/nr02/a02 [details]
- Potkamp, G., Vermeij, M. J. A., & Hoeksema, B. W. (2017). Host-dependent variation in density of corallivorous snails (Coralliophila spp.) at Curaçao, southern Caribbean. Marine Biodiversity, 47(1), 91-99. https://doi.org/10.1007/s12526-016-0596-9 [details]
- Salcedo-Sanz, S., Muñoz-Bulnes, J., & Vermeij, M. J. A. (2017). New coral reefs-based approaches for the model type selection problem: A novel method to predict a nation's future energy demand. International Journal of Bio-Inspired Computation, 10(3), 145-158. https://doi.org/10.1504/IJBIC.2017.086698 [details]
2016
- Bernal, M. A., Floeter, S. R., Gaither, M. R., Longo, G. O., Morais, R., Ferreira, C. E. L., Vermeij, M. J. A., & Rocha, L. A. (2016). High prevalence of dermal parasites among coral reef fishes of Curaçao. Marine Biodiversity, 46(1), 67-74. Advance online publication. https://doi.org/10.1007/s12526-015-0322-z [details]
- Chamberland, V. F., Petersen, D., Latijnhouwers, K. R. W., Snowden, S., Mueller, B., & Vermeij, M. J. A. (2016). Four-year-old Caribbean Acropora colonies reared from field-collected gametes are sexually mature. Bulletin of Marine Science, 92(2), 263-264. https://doi.org/10.5343/bms.2015.1074 [details]
- Hester, E. R., Barott, K. L., Nulton, J., Vermeij, M. J. A., & Rohwer, F. L. (2016). Stable and sporadic symbiotic communities of coral and algal holobionts. The ISME Journal, 10(5), 1157-1169. Advance online publication. https://doi.org/10.1038/ismej.2015.190 [details]
- Knowles, B., Silveira, C. B., Bailey, B. A., Barott, K., Cantu, V. A., Cobián-Güemes, A. G., Coutinho, F. H., Dinsdale, E. A., Felts, B., Furby, K. A., George, E. E., Green, K. T., Gregoracci, G. B., Haas, A. F., Haggerty, J. M., Hester, E. R., Hisakawa, N., Kelly, L. W., Lim, Y. W., ... Rohwer, F. (2016). Corrigendum: Lytic to temperate switching of viral communities. Nature, 539(7627), 123. https://doi.org/10.1038/nature19335
- Knowles, B., Silveira, C. B., Bailey, B. A., Barott, K., Cantu, V. A., Cobián-Güemes, A. G., Coutinho, F. H., Dinsdale, E. A., Felts, B., Furby, K. A., George, E. E., Green, K. T., Gregoracci, G. B., Haas, A. F., Haggerty, J. M., Hester, E. R., Hisakawa, N., Kelly, L. W., Lim, Y. W., ... Rohwer, F. (2016). Lytic to temperate switching of viral communities. Nature, 531(7595), 466-470. Advance online publication. https://doi.org/10.1038/nature17193 [details]
- Miller, M., Williams, D. E., Huntington, B. E., Piniak, G. A., & Vermeij, M. J. A. (2016). Decadal comparison of a diminishing coral community: A study using demographics to advance inferences of community status. PeerJ, 4, Article e1643. https://doi.org/10.7717/peerj.1643 [details]
- Mueller, B., den Haan, J., Visser, P. M., Vermeij, M. J. A., & van Duyl, F. C. (2016). Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae. Scientific Reports, 6, Article 23248. https://doi.org/10.1038/srep23248 [details]
- Quinn, R. A., Vermeij, M. J. A., Hartmann, A. C., Galtier d'Auriac, I., Benler, S., Haas, A., Quistad, S. D., Lim, Y. W., Little, M., Sandin, S., Smith, J. E., Dorrestein, P. C., & Rohwer, F. (2016). Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proceedings of the Royal Society B-Biological Sciences, 283(1829), Article 20160469. https://doi.org/10.1098/rspb.2016.0469 [details]
- Salcedo-Sanz, S., Cuadra, L., & Vermeij, M. J. A. (2016). A review of Computational Intelligence techniques in coral reef-related applications. Ecological Informatics, 32, 107-123. https://doi.org/10.1016/j.ecoinf.2016.01.008 [details]
- Swierts, T., & Vermeij, M. J. A. (2016). Competitive interactions between corals and turf algae depend on coral colony form. PeerJ, 4, Article e1984. https://doi.org/10.7717/peerj.1984 [details]
- den Haan, J., Huisman, J., Brocke, H. J., Goehlich, H., Latijnhouwers, K. R. W., van Heeringen, S., Honcoop, S. A. S., Bleyenberg, T. E., Schouten, S., Cerli, C., Hoitinga, L., Vermeij, M. J. A., & Visser, P. M. (2016). Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse. Scientific Reports, 6, Article 28821. https://doi.org/10.1038/srep28821 [details]
2015
- Alexander, B. E., Mueller, B., Vermeij, M. J. A., van der Geest, H. H. G., & de Goeij, J. M. (2015). Biofouling of inlet pipes affects water quality in running seawater aquaria and compromises sponge cell proliferation. PeerJ, 3, Article e1430. https://doi.org/10.7717/peerj.1430 [details]
- Bongaerts, P., Frade, P. R., Hay, K. B., Englebert, N., Latijnhouwers, K. R. W., Bak, R. P. M., Vermeij, M. J. A., & Hoegh-Guldberg, O. (2015). Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community. Scientific Reports, 5, Article 7652. https://doi.org/10.1038/srep07652 [details]
- Chamberland, V. F., Vermeij, M. J. A., Brittsan, M., Carl, M., Schick, M., Snowden, S., Schrier, A., & Petersen, D. (2015). Restoration of critically endangered elkhorn coral (Acropora palmata) populations using larvae reared from wild-caught gametes. Global Ecology and Conservation, 4, 526-537. https://doi.org/10.1016/j.gecco.2015.10.005 [details]
- Garg, N., Kapono, C. A., Lim, Y. W., Koyama, N., Vermeij, M. J. A., Conrad, D., Rohwer, F., & Dorrestein, P. C. (2015). Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. International Journal of Mass Spectrometry, 377, 719-727. https://doi.org/10.1016/j.ijms.2014.06.005 [details]
- Haas, A. F., Guibert, M., Foerschner, A., Co, T., Calhoun, S., George, E., Hatay, M., Dinsdale, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Felts, B., Dustan, P., Salamon, P., & Rohwer, F. (2015). Can we measure beauty? Computational evaluation of coral reef aesthetics. PeerJ, 3, Article e1390. https://doi.org/10.7717/peerj.1390 [details]
- Hartmann, A. C., Sandin, S. A., Chamberland, V. F., Marhaver, K. L., de Goeij, J. M., & Vermeij, M. J. A. (2015). Crude oil contamination interrupts settlement of coral larvae after direct exposure ends. Marine Ecology - Progress Series, 536, 163-173. Advance online publication. https://doi.org/10.3354/meps11437 [details]
- Marhaver, K. L., Vermeij, M. J. A., & Medina, M. M. (2015). Reproductive natural history and successful juvenile propagation of the threatened Caribbean Pillar Coral Dendrogyra cylindrus. BMC Ecology, 15, Article 9. https://doi.org/10.1186/s12898-015-0039-7 [details]
- Vermeij, M. J. A., Debey, H., Grimsditch, G., Brown, J., Obura, D., DeLeon, R., & Sandin, S. A. (2015). Negative effect of gardening damselfish Stegastes planifrons on coral health depend on predator abundance. Marine Ecology - Progress Series, 528, 289-296. https://doi.org/10.3354/meps11243 [details]
2014
- Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., Haas, A. F., Haynes, M., Lim, Y. W., McDole, T., Nelson, C. E., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Youle, M., & Rohwer, F. (2014). Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America, 111(28), 10227-10232. https://doi.org/10.1073/pnas.1403319111 [details]
- Lim, Y. W., Cuevas, D. A., Silva, G. G. Z., Aguinaldo, K., Dinsdale, E. A., Haas, A. F., Hatay, M., Sanchez, S. E., Wegley-Kelly, L., Dutilh, B. E., Harkins, T. T., Lee, C. C., Tom, W., Sandin, S. A., Smith, J. E., Zgliczynski, B., Vermeij, M. J. A., Rohwer, F., & Edwards, R. A. (2014). Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PeerJ, 2, Article e520. https://doi.org/10.7717/peerj.520 [details]
- Mueller, B., de Goeij, J. M., Vermeij, M. J. A., Mulders, Y., van der Ent, E., Ribes, M., & van Duyl, F. C. (2014). Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC). PLoS ONE, 9(2), e90152. Advance online publication. https://doi.org/10.1371/journal.pone.0090152 [details]
- Mueller, B., van der Zande, R. M., van Leent, P. J. M., Meesters, E. H., Vermeij, M. J. A., & van Duyl, F. C. (2014). Effect of light availability on dissolved organic carbon release by Caribbean reef algae and corals. Bulletin of Marine Science, 90(3), 875-893. https://doi.org/10.5343/bms.2013.1062 [details]
- den Haan, J., Visser, P. M., Ganase, A. E., Gooren, E. E., Stal, L. J., van Duyl, F. C., Vermeij, M. J. A., & Huisman, J. (2014). Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef. Coral reefs, 33(4), 1003-1015. https://doi.org/10.1007/s00338-014-1207-5 [details]
2013
- Bongaerts, P., Frade, P. R., Ogier, J. J., Hay, K. B., van Bleijswijk, J., Englebert, N., Vermeij, M. J. A., Bak, R. P. M., Visser, P. M., & Hoegh-Guldberg, O. (2013). Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef. BMC Evolutionary Biology, 13, 205. https://doi.org/10.1186/1471-2148-13-205 [details]
- Filatov, M. V., Frade, P. R., Bak, R. P. M., Vermeij, M. J. A., & Kaandorp, J. A. (2013). Comparison between colony morphology and molecular phylogeny in the Caribbean scleractinian coral genus Madracis. PLoS ONE, 8(8), e71287. https://doi.org/10.1371/journal.pone.0071287 [details]
- Foster, N. L., Baums, I. B., Sanchez, J. A., Paris, C. B., Chollett, I., Agudelo, C. L., Vermeij, M. J. A., & Mumby, P. J. (2013). Hurricane-driven patterns of clonality in an ecosystem engineer: The Caribbean coral Montastraea annularis. PLoS ONE, 8(1), e53283. https://doi.org/10.1371/journal.pone.0053283 [details]
- Gregg, A. K., Hatay, M., Haas, A. F., Robinett, N. L., Barott, K., Vermeij, M. J. A., Marhaver, K., Thompson, F., Meirelles, P., & Rohwer, F. (2013). Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates. PeerJ, 1, Article e107. https://doi.org/10.7717/peerj.107 [details]
- Hartmann, A. C., Marhaver, K. L., Chamberland, V. F., Sandin, S. A., & Vermeij, M. J. A. (2013). Large birth size does not reduce the negative latent effects of harsh environmental conditions across life stages in two coral species. Ecology, 94(9), 1966-1976. https://doi.org/10.1890/13-0161.1 [details]
- Marhaver, K. L., Vermeij, M. J. A., Rohwer, F., & Sandin, S. A. (2013). Janzen-Connell effects in a broadcast-spawning Caribbean coral: Distance-dependent survival of larvae and settlers. Ecology, 94(1), 146-160. https://doi.org/10.1890/12-0985.1 [details]
- Vermeij, M. J. A., van der Heijden, R. A., Olthuis, J. G., Marhaver, K. L., Smith, J. E., & Visser, P. M. (2013). Survival and dispersal of turf algae and macroalgae consumed by herbivorous coral reef fishes. Oecologia, 171(2), 417-425. https://doi.org/10.1007/s00442-012-2436-3 [details]
- de Goeij, J. M., van Oevelen, D., Vermeij, M. J. A., Osinga, R., Middelburg, J. J., de Goeij, A. F. P. M., & Admiraal, W. (2013). Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs. Science, 342(6154), 108-110. Advance online publication. https://doi.org/10.1126/science.1241981 [details]
- de León, R., Vane, K., Bertuol, P., Chamberland, V. C., Simal, F., Imms, E., & Vermeij, M. J. A. (2013). Effectiveness of lionfish removal efforts in the Southern Caribbean. Endangered Species Research, 22(2), 175-182. https://doi.org/10.3354/esr00542 [details]
- den Haan, J., Huisman, J., Dekker, F., ten Brinke, J. L., Ford, A. K., van Ooijen, J., van Duyl, F. C., Vermeij, M. J. A., & Visser, P. M. (2013). Fast detection of nutrient limitation in macroalgae and seagrass with nutrient-induced fluorescence. PLoS ONE, 8(7), e68834. https://doi.org/10.1371/journal.pone.0068834 [details]
2012
- Barott, K. L., Rodriguez-Mueller, B., Youle, M., Marhaver, K. L., Vermeij, M. J. A., Smith, J. E., & Rohwer, F. L. (2012). Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae. Proc. R. Soc. B, 279(1733), 1655-1664. https://doi.org/10.1098/rspb.2011.2155 [details]
- Barott, K. L., Williams, G. J., Vermeij, M. J. A., Harris, J., Smith, J. E., Rohwer, F. L., & Sandin, S. A. (2012). Natural history of coral-algae competition across a gradient of human activity in the Line Islands. Marine Ecology - Progress Series, 460, 1-12. https://doi.org/10.3354/meps09874 [details]
- Foster, N. L., Paris, C. B., Kool, J. T., Baums, I. B., Stevens, J. R., Sanchez, J. A., Bastidas, C., Agudelo, C., Bush, P., Day, O., Ferrari, R., Gonzalez, P., Gore, S., Guppy, R., McCartney, M. A., McCoy, C., Mendes, J., Srinivasan, A., Steiner, S., ... Mumby, P. J. (2012). Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow. Molecular Ecology, 21(5), 1143-1157. https://doi.org/10.1111/j.1365-294X.2012.05455.x [details]
- Stampar, S. N., Maronna, M. M., Vermeij, M. J. A., d. Silveira, F. L., & Morandini, A. C. (2012). Evolutionary diversification of banded tube-dwelling anemones (Cnidaria; Ceriantharia; Isarachnanthus) in the Atlantic Ocean. PLoS ONE, 7(7), Article e41091. [details]
- Wegley Kelly, L., Barott, K. L., Dinsdale, E., Friedlander, A. M., Nosrat, B., Obura, D., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Williams, G. J., Willner, D., & Rohwer, F. (2012). Black reefs: iron-induced phase shifts on coral reefs. The ISME Journal, 6, 638-649. https://doi.org/10.1038/ismej.2011.114 [details]
2011
- Muller, E., & Vermeij, M. J. A. (2011). Day time spawning of a Caribbean coral. Coral reefs, 30(4), 1147-1147. https://doi.org/10.1007/s00338-011-0814-7 [details]
- Vermeij, M. J. A., Bakker, J., van der Hal, N., & Bak, R. P. M. (2011). Juvenile coral abundance has decreased by more than 50% in only three decades on a small Caribbean island. Diversity, 3(3), 296-307. https://doi.org/10.3390/d3030296 [details]
- Vermeij, M. J. A., Dailer, M. L., & Smith, C. M. (2011). Crustose coralline algae can suppress macroalgal growth and recruitment on Hawaiian coral reefs. Marine Ecology - Progress Series, 422, 1-7. https://doi.org/10.3354/meps08964 [details]
2010
- Filatov, M. V., Kaandorp, J. A., Postma, M., van Liere, R., Kruszyński, K. J., Vermeij, M. J. A., Streekstra, G. J., & Bak, R. P. M. (2010). A comparison between coral colonies of the genus Madracis and simulated forms. Proceedings of the Royal Society B-Biological Sciences, 277(1700), 3555-3561. https://doi.org/10.1098/rspb.2010.0957 [details]
- Toller, W., Debrot, A. O., Vermeij, M. J. A., & Hoetjes, P. C. (2010). Reef fishes of Saba Bank, Netherlands Antilles: assemblage structure across a gradient of habitat types. PLoS ONE, 5(5), e9207. https://doi.org/10.1371/journal.pone.0009207 [details]
- Vermeij, M. J. A. (2010). First observation of a nocturnal nudibranch feeding on Caribbean corals. Coral reefs, 29(4), 1047-1047. https://doi.org/10.1007/s00338-010-0685-3 [details]
- Vermeij, M. J. A., Barott, K. L., Johnson, A. E., & Marhaver, K. L. (2010). Release of eggs from tentacles in a Caribbean coral. Coral reefs, 29(2), 411-411. https://doi.org/10.1007/s00338-010-0595-4 [details]
- Vermeij, M. J. A., Dailer, M. L., Walsh, S. M., Donovan, M. K., & Smith, C. M. (2010). The effects of trophic interactions and spatial competition on algal community composition on Hawaiian coral reefs. Marine Ecology, 31(2), 291-299. https://doi.org/10.1111/j.1439-0485.2009.00343.x [details]
- Vermeij, M. J. A., Debrot, A. O., van der Hal, N., Bakker, J., & Bak, R. P. M. (2010). Increased recruitment rates indicate recovering populations of the sea urchin Diadema antillarum on Curaçao. Bulletin of Marine Science, 86(3), 719-725. http://openurl.ingenta.com/content?genre=article&issn=0007-4977&volume=86&issue=3&spage=719&epage=725 [details]
- Vermeij, M. J. A., Marhaver, K. L., Huijbers, C. M., Nagelkerken, I., & Simpson, S. D. (2010). Coral larvae move toward reef sounds. PLoS ONE, 5(5), e10660. https://doi.org/10.1371/journal.pone.0010660 [details]
- Vermeij, M. J. A., van Moorselaar, I., Engelhard, S., Hörnlein, C., Vonk, S. M., & Visser, P. M. (2010). The effects of nutrient enrichment and herbivore abundance on the ability of turf algae to overgrow coral in the Caribbean. PLoS ONE, 5(12), Article e14312. https://doi.org/10.1371/journal.pone.0014312 [details]
2009
- Ritson-Williams, R., Arnold, S. N., Fogarty, N. D., Steneck, R. S., Vermeij, M. J. A., & Paul, V. J. (2009). New perspectives on ecological mechanisms affecting coral recruitment on reefs. Smithsonian Contributions to the Marine Sciences, 437-457. http://www.sil.si.edu/SmithsonianContributions/MarineSciences/pdf_hi/SCMS-0038.pdf [details]
- Vermeij, M. J. A. (2009). Floating corallites: A new ecophenotype in scleractinian corals. Coral reefs, 28(4), 987-987. https://doi.org/10.1007/s00338-009-0535-3 [details]
- Vermeij, M. J. A., Dailer, M. L., & Smith, C. M. (2009). Nutrient enrichment promotes survival and dispersal of drifting fragments in an invasive tropical macroalga. Coral reefs, 28(2), 429-435. https://doi.org/10.1007/s00338-008-0452-x [details]
- Vermeij, M. J. A., Smith, J. E., Smith, C. M., Vega Thurber, R., & Sandin, S. A. (2009). Survival and settlement success of coral planulae: Independent and synergistic effects of macroalgae and microbes. Oecologia, 159(2), 325-336. https://doi.org/10.1007/s00442-008-1223-7 [details]
- Vermeij, M. J. A., Smith, T. B., Dailer, M. L., & Smith, C. M. (2009). Release from native herbivores facilitates the persistence of invasive marine algae: A biogeographical comparison of the relative contribution of nutrients and herbivory to invasion success. Biological Invasions, 11(6), 1463-1474. https://doi.org/10.1007/s10530-008-9354-7 [details]
2018
- George, E. E., Mullinix, J., Meng, F., Bailey, B., Edwards, C., Felts, B., Haas, A., Hartmann, A. C., Mueller, B., Nulton, J., Roach, T. N. F., Salamon, P., Silveira, C. B., Vermeij, M. J. A., Rohwer, F. L., & Luque, A. (2018). Relevance of coral geometry in the outcomes of the coral-algal benthic war. BioRxiv. https://doi.org/10.1101/327031 [details]
- Hagedorn, M., Page, C. A., O'Neill, K., Flores, D. M., Tichy, L., Chamberland, V. F., Lager, C., Zuchowicz, N., Lohr, K., Blackburn, H., Vardi, T., Moore, J., Moore, T., Vermeij, M. J. A., & Marhaver, K. L. (2018). Successful demonstration of assisted gene flow in the threatened coral Acropora palmata across genetically-isolated Caribbean populations using cryopreserved sperm. (v1 ed.) BioRxiv. https://doi.org/10.1101/492447 [details]
- Kwong, W. K., del Campo, J., Mathur, V., Vermeij, M. J. A., & Keeling, P. J. (2018). A widespread coral-infecting apicomplexan contains a plastid encoding chlorophyll biosynthesis. (v1 ed.) BioRxiv. https://doi.org/10.1101/391565 [details]
- Silveira, C. B., Roach, T. N. F., Villela, H., Barno, A., Reyes, B., Rubio-Portillo, E., Le, T., Mead, S., Hatay, M., Luque, A., Wegley-Kelly, L., Vermeij, M., Bailey, B., Takeshita, Y., Haas, A., & Rohwer, F. (2018). Biophysical and physiological causes of coral reef microbialization. (v1 ed.) BioRxiv. https://doi.org/10.1101/495481 [details]
- del Campo, J., Pons, M. J., Herranz, M., Wakeman, K. C., del Valle, J., Vermeij, M. J. A., & Keeling, P. J. (2018). A universal set of primers to study animal associated microeukaryotic communities. (v1 ed.) BioRxiv. https://doi.org/10.1101/485532 [details]
2016
- Quinn, R. A., Vermeij, M. J. A., Hartmann, A. C., Galtier d'Auriac, I., Benler, S., Haas, A., Quistad, S. D., Lim, Y. W., Little, M., Sandin, S., Smith, J. E., Dorrestein, P. C., & Rohwer, F. (2016). Correction to ‘Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence’. Proceedings of the Royal Society B-Biological Sciences, 283(1837), Article 20161485. https://doi.org/10.1098/rspb.2016.1485
2014
- Mumby, P. J., Flower, J., Chollett, I., Box, S. J., Bozec, Y. M., Fitzsimmons, C., Forster, J., Gill, D., Griffith-Mumby, R., Oxenford, H. A., Peterson, A. M., Stead, S. M., Turner, R. A., Townsley, P., van Beukering, P. J. H., Booker, F., Brocke, H. J., Cabañillas-Terán, N., Canty, S. W. J., ... Williams, S. M. (2014). Towards Reef Resilience and Sustainable Livelihoods: A Handbook for Caribbean Coral Reef Managers. University of Exeter. [details]
2013
- Chamberland, V. F., Petersen, D., & Vermeij, M. J. A. (2013). Restoration of critically endangered Elkhorn coral (Acropora palmata) using sexually produced recruits. In M. A. Lang, & M. D. J. Sayer (Eds.), Proceedings of the 2013 AAUS/ESDP Curaçao Joint International Scientific Diving Symposium, October 24-27, 2013, Curaçao (pp. 43-48). American Academy of Underwater Sciences. http://www.epa.gov/region10/pdf/diveteam/publications/2013_aaus_esdp_diving_for_science.pdf [details]
2025
- Jacko-Reynolds, V. K. L., Kwong, W. K., Livingston, S. J., Trznadel, M., Bonacolta, A. M., Lax, G., Shivak, J., Irwin, N. A. T., Vermeij, M. J. A., Campo, J., Keeling, P. J. & Jacko-Reynolds, V. (2025). Phylogenomics of coral-infecting corallicolids reveal multiple independent losses of chlorophyll biosynthesis in apicomplexan parasites. Borealis. https://doi.org/10.5683/sp3/2lxg4d
2023
- Kornder, N. A., Müller, B., de Goeij, J., Vermeij, M., Huisman, J., Cappelletto, J., Zalm, M. J. L. & Martinez, S. (14-4-2023). Thesis_Niklas-Kornder_Supplementary-data_Chapter2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.22592962.v1
- Kornder, N. A., de Goeij, J., Huisman, J., Vermeij, M., Müller, B., Esser, Y., Stoupin, D. & Leys, S. P. (12-4-2023). Thesis_Niklas-Kornder_Chapter3. Universiteit van Amsterdam. https://doi.org/10.21942/uva.22592956.v1
- Kornder, N., Huisman, J., de Goeij, J., Vermeij, M., Rombouts, A. J., Barnes, W. J. & Riley, A. T. K. (12-4-2023). Thesis_Niklas-Kornder_Chapter4. Universiteit van Amsterdam. https://doi.org/10.21942/uva.22592536.v2
- Kornder, N., Huisman, J., de Goeij, J. & Vermeij, M. (12-4-2023). Thesis_Niklas-Kornder_Chapter6. Universiteit van Amsterdam. https://doi.org/10.21942/uva.22592944.v1
- Kornder, N., Huisman, J., de Goeij, J., Vermeij, M., Esser, Y., de Nooijer, L. J. & Webb, A. E. (12-4-2023). Thesis_Niklas-Kornder_Chapter5. Universiteit van Amsterdam. https://doi.org/10.21942/uva.22592905.v1
- Quinlan, Z. A., Bennett, M.-J., Arts, M. G. I., Levenstein, M., Flores, D., Tholen, H. M., Tichy, L., Juarez, G., Haas, A. F., Chamberland, V., Latijnhouwers, K., Vermeij, M. J. A., Johnson, A., Marhaver, K. L. & Kelly, L. (2023). Table S1. CCA significantly enriched exometabolites from Coral larval settlement induction using tissue-associated and exuded coralline algae metabolites and the identification of putative chemical cues. The Royal Society. https://doi.org/10.6084/m9.figshare.24218430.v1
2022
- Müller, B., Brocke, H., Rohwer, F., Dittmar, T., Huisman, J., Vermeij, M. & de Goeij, J. (2022). Nocturnal dissolved organic matter release by turf algae and its role in the microbialization of reefs. DRYAD. https://doi.org/10.5061/dryad.1ns1rn8ww
2019
- Vermeij, M., Latijnhouwers, K., Dilrosun, F., Chamberland, V., Dube, C., Van Buurt, G. & Debrot, D. (2019). Data used to assess historical changes (1905-present) in catch size and composition reflecting altering fisheries practices on a small Caribbean island. SEANOE. https://doi.org/10.17882/60223
2018
- Chamberland, V., Closek, C. J., Marhaver, K. L., Hartmann, A. C., Klueter, A., Vermeij, M. J. A., Deheyn, D. D., Archer, F. I., Diaz, E., Medina, M. & Lovci, M. T. (2018). Data from: Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host. DRYAD. https://doi.org/10.5061/dryad.js42579
2017
- Chamberland, V., Latijnhouwers, K., Huisman, J., Hartmann, A. C. & Vermeij, M. J. A. (2017). Data set from Costs and benefits of maternally inherited algal symbionts in coral larvae. The Royal Society. https://doi.org/10.6084/m9.figshare.5100352.v1
2016
- Marhaver, K. L., Vermeij, M. J. A., Rohwer, F. & Sandin, S. A. (2016). Appendix A. Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 2–7.. Wiley. https://doi.org/10.6084/m9.figshare.3555081.v1
- Hartmann, A. C., Marhaver, K. L., Chamberland, V., Sandin, S. A. & Vermeij, M. J. A. (2016). Appendix A. Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 1–3.. Wiley. https://doi.org/10.6084/m9.figshare.3557325.v1
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Ancillary activities
-
Carmabi Foundation
onderzoekswerkzaamheden, management -
Carmabi Foundation
Onderzoek/ natuurbeheer/ educatie
-
Carmabi Foundation
Hernández-Agreda, A., Huckeba, J., Prata, K. E., Vermeij, M. J. A., & Bongaerts, P. (2024). Hybridization and inbreeding affect the survival of a critically endangered coral. Current Biology, 34(21), 5120-5129.e4.